Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   BC6307_RS03070 Genome accession   NZ_CP018866
Coordinates   647922..648875 (+) Length   317 a.a.
NCBI ID   WP_066419926.1    Uniprot ID   A0A223KLI5
Organism   Sutcliffiella cohnii strain DSM 6307     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 642922..653875
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC6307_RS03055 (BC6307_03060) - 643287..644129 (-) 843 WP_066419924.1 patatin family protein -
  BC6307_RS03060 (BC6307_03065) pepF 644397..646211 (+) 1815 WP_066419925.1 oligoendopeptidase F -
  BC6307_RS03065 (BC6307_03070) - 646422..647549 (+) 1128 WP_235858245.1 histidine kinase N-terminal domain-containing protein -
  BC6307_RS03070 (BC6307_03075) ceuB 647922..648875 (+) 954 WP_066419926.1 ABC transporter permease Machinery gene
  BC6307_RS03075 (BC6307_03080) - 648865..649812 (+) 948 WP_066419927.1 iron chelate uptake ABC transporter family permease subunit -
  BC6307_RS03080 (BC6307_03085) - 649809..650567 (+) 759 WP_066419929.1 ATP-binding cassette domain-containing protein -
  BC6307_RS03085 (BC6307_03090) - 650673..651620 (+) 948 WP_066419932.1 siderophore ABC transporter substrate-binding protein -
  BC6307_RS03090 (BC6307_03095) - 651829..653097 (+) 1269 WP_066419940.1 hemolysin family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35341.85 Da        Isoelectric Point: 10.0869

>NTDB_id=211066 BC6307_RS03070 WP_066419926.1 647922..648875(+) (ceuB) [Sutcliffiella cohnii strain DSM 6307]
MKRRYLIILLIILSIISLFIGVKNITPLDLIYWRDDEVQIFLISRVPRLVSIIIAGVSLSICGLIMQQLTRNKFVSPTTA
GTMDSARLGVLVSLMLFTSASMFQKMIVAFIFALLGTFIFMKILDKVKYKDAIFIPLVGLMFGNIIGSITTFFAYKNDLI
QNMSSWLQGNFSLIMQGRYELLYISIPLMAIAYLYANRFTVAGMGEEFAVNLGMNYKRVVNIGLIIVALVATLVLLTVGM
IPFLGLIVPNIVSLYQGDNLKKNLSHTALIGAIFVLVCDILGRTIIYPYEIPIGLTVGVIGSGMFLYLLMRRKNYAA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=211066 BC6307_RS03070 WP_066419926.1 647922..648875(+) (ceuB) [Sutcliffiella cohnii strain DSM 6307]
ATGAAAAGAAGGTATTTAATAATCTTACTAATAATTTTATCCATTATCTCCTTATTTATCGGAGTGAAAAACATTACACC
ACTTGACTTAATTTATTGGAGAGATGATGAAGTACAAATTTTTCTAATAAGTCGAGTACCACGGTTAGTAAGTATTATTA
TTGCCGGTGTTTCTTTAAGTATTTGTGGTTTAATCATGCAACAATTAACTAGAAACAAGTTTGTTTCTCCTACTACTGCT
GGAACGATGGACTCTGCGCGTTTAGGTGTTCTAGTTTCGTTAATGTTATTTACATCTGCAAGCATGTTCCAAAAAATGAT
TGTTGCGTTTATTTTTGCTTTACTAGGAACCTTCATTTTTATGAAAATATTAGATAAAGTTAAGTATAAAGATGCCATTT
TTATTCCGTTAGTAGGTTTAATGTTTGGTAATATTATAGGTTCCATAACTACTTTCTTTGCGTACAAGAACGATTTAATT
CAGAATATGTCTTCATGGCTACAAGGTAATTTTTCGTTAATTATGCAAGGAAGGTACGAATTACTCTATATAAGTATTCC
TTTAATGGCTATCGCCTATCTTTATGCTAACCGATTTACGGTAGCTGGGATGGGAGAGGAATTCGCAGTTAACCTAGGAA
TGAATTATAAACGAGTAGTTAATATCGGATTAATTATTGTAGCGTTAGTAGCTACATTGGTATTGTTAACAGTCGGTATG
ATACCGTTTTTAGGATTAATTGTTCCTAATATCGTAAGTTTATATCAAGGAGACAACTTAAAGAAAAACCTATCTCATAC
TGCCCTAATTGGTGCAATCTTCGTATTAGTATGTGACATTCTTGGTAGAACGATTATTTACCCGTATGAAATCCCTATCG
GTTTAACAGTAGGTGTTATAGGAAGCGGAATGTTCCTGTACCTATTAATGAGGAGAAAGAATTATGCAGCTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223KLI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.38

99.685

0.552

Multiple sequence alignment