Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   XF_RS00620 Genome accession   NC_002488
Coordinates   151195..151869 (-) Length   224 a.a.
NCBI ID   WP_023906059.1    Uniprot ID   Q9PGZ8
Organism   Xylella fastidiosa 9a5c     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 146195..156869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS00605 (XF0145) - 147702..148457 (-) 756 WP_010892690.1 SDR family NAD(P)-dependent oxidoreductase -
  XF_RS00610 (XF0146) - 148592..149338 (-) 747 WP_010892691.1 SPOR domain-containing protein -
  XF_RS00615 (XF0147) argS 149378..151066 (-) 1689 WP_031336160.1 arginine--tRNA ligase -
  XF_RS00620 (XF0148) radC 151195..151869 (-) 675 WP_023906059.1 RadC family protein Machinery gene
  XF_RS00625 (XF0149) coaBC 151968..153197 (+) 1230 WP_010892694.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  XF_RS00630 (XF0150) dut 153194..153661 (+) 468 WP_010892695.1 dUTP diphosphatase -
  XF_RS00635 - 153675..156038 (+) 2364 WP_023906061.1 phosphomannomutase/phosphoglucomutase -
  XF_RS00640 (XF0152) - 156052..156732 (-) 681 WP_023906062.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24618.16 Da        Isoelectric Point: 9.2229

>NTDB_id=21098 XF_RS00620 WP_023906059.1 151195..151869(-) (radC) [Xylella fastidiosa 9a5c]
MHINNWPTHERPREKLLAHGAATLSDAELLAIFLGSGLRGHDAVQTARNLLHTHGPLRELLDRPPGDLMRLPGLGLARAC
KLTAALELSTRHLAAALQRGASIHDPISAGRYFAQRLRANPNEVFAVLFLDNRHRAISFEELFHGTINGAEVHPREVVRR
ALTLNAAAVIVGHNHPSGNREPSPADRMITQRLKNALDLIDVRLVDHFVIGDGAPVSFAEHGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=21098 XF_RS00620 WP_023906059.1 151195..151869(-) (radC) [Xylella fastidiosa 9a5c]
ATGCACATCAACAACTGGCCTACGCATGAACGACCACGTGAAAAACTGCTGGCCCACGGTGCCGCCACACTTTCGGATGC
AGAACTGCTCGCAATCTTCCTAGGCTCTGGCCTGCGCGGTCATGACGCCGTGCAAACTGCACGTAACCTGCTGCACACTC
ATGGCCCACTACGAGAACTGCTGGACCGACCTCCAGGTGATCTCATGCGCCTGCCCGGGTTAGGTCTGGCACGCGCCTGC
AAACTCACCGCAGCACTGGAATTAAGCACCCGCCACCTAGCCGCCGCCCTGCAACGCGGCGCAAGTATCCACGATCCAAT
CAGCGCCGGACGCTATTTCGCACAGCGCCTACGAGCGAATCCAAATGAAGTCTTCGCCGTCCTATTTTTAGACAATAGGC
ACCGCGCGATCAGCTTTGAAGAATTGTTCCACGGCACCATCAACGGTGCCGAAGTACATCCACGCGAAGTCGTACGACGC
GCATTAACTCTGAACGCAGCAGCAGTGATCGTCGGCCATAATCACCCATCCGGTAACCGCGAACCATCACCAGCCGACCG
AATGATCACCCAACGCTTAAAAAACGCCTTAGACCTCATCGACGTGCGCCTAGTCGACCACTTCGTGATTGGCGACGGTG
CGCCGGTCTCATTCGCCGAACATGGCTGGCTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PGZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.192

95.089

0.411

Multiple sequence alignment