Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR537_RS09740 Genome accession   NZ_CP024138
Coordinates   1929353..1929829 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1924353..1934829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR537_RS27970 (CR537_09680) - 1924590..1924772 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CR537_RS27580 - 1924892..1924972 (+) 81 WP_023441679.1 hypothetical protein -
  CR537_RS27260 - 1925261..1925341 (-) 81 Protein_1795 hypothetical protein -
  CR537_RS09710 (CR537_09690) yeeW 1925387..1925581 (-) 195 WP_000988599.1 DUF5983 family protein -
  CR537_RS09715 (CR537_09695) - 1925643..1925951 (-) 309 Protein_1797 TA system toxin CbtA family protein -
  CR537_RS09720 (CR537_09700) cbeA 1926040..1926408 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CR537_RS09725 (CR537_09705) yeeT 1926482..1926703 (-) 222 WP_101980492.1 DUF987 domain-containing protein -
  CR537_RS09730 (CR537_09710) istA 1926884..1928425 (+) 1542 WP_001298859.1 IS21-like element ISEc12 family transposase -
  CR537_RS09735 (CR537_09715) istB 1928440..1929186 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  CR537_RS09740 (CR537_09720) radC 1929353..1929829 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CR537_RS09745 (CR537_09725) - 1929845..1930324 (-) 480 WP_101980493.1 antirestriction protein -
  CR537_RS09750 (CR537_09730) - 1930406..1931227 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  CR537_RS09760 (CR537_09740) - 1931448..1931858 (-) 411 WP_000846713.1 hypothetical protein -
  CR537_RS09765 (CR537_09745) - 1931874..1932557 (-) 684 WP_021525676.1 hypothetical protein -
  CR537_RS09770 (CR537_09750) - 1932693..1933763 (-) 1071 WP_101980494.1 patatin-like phospholipase family protein -
  CR537_RS09775 (CR537_09755) - 1933768..1934664 (-) 897 Protein_1808 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=210979 CR537_RS09740 WP_001186773.1 1929353..1929829(-) (radC) [Escherichia coli strain 14EC020]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210979 CR537_RS09740 WP_001186773.1 1929353..1929829(-) (radC) [Escherichia coli strain 14EC020]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392