Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BUQ73_RS02490 Genome accession   NZ_CP018846
Coordinates   530625..531992 (+) Length   455 a.a.
NCBI ID   WP_060485566.1    Uniprot ID   A0A315SVN3
Organism   Pseudomonas putida strain AA7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 525625..536992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ73_RS02460 cydB 525852..526859 (+) 1008 WP_079226526.1 cytochrome d ubiquinol oxidase subunit II -
  BUQ73_RS02465 - 526869..527024 (+) 156 WP_016489104.1 DUF2474 domain-containing protein -
  BUQ73_RS02470 - 527078..528202 (-) 1125 WP_079226527.1 methyltransferase -
  BUQ73_RS02475 - 528296..529006 (-) 711 WP_079226528.1 autoinducer binding domain-containing protein -
  BUQ73_RS02480 - 529219..529995 (+) 777 WP_079226529.1 ferredoxin--NADP reductase -
  BUQ73_RS02485 mscL 530028..530447 (-) 420 WP_079226530.1 large-conductance mechanosensitive channel protein MscL -
  BUQ73_RS02490 radA 530625..531992 (+) 1368 WP_060485566.1 DNA repair protein RadA Machinery gene
  BUQ73_RS02495 - 532053..533570 (-) 1518 WP_027918408.1 nucleobase:cation symporter-2 family protein -
  BUQ73_RS02500 - 533834..534199 (-) 366 WP_060485564.1 PilZ domain-containing protein -
  BUQ73_RS02505 - 534470..536536 (+) 2067 WP_079226531.1 carbon starvation CstA family protein -
  BUQ73_RS02510 - 536550..536747 (+) 198 WP_027918412.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48662.10 Da        Isoelectric Point: 6.8984

>NTDB_id=210970 BUQ73_RS02490 WP_060485566.1 530625..531992(+) (radA) [Pseudomonas putida strain AA7]
MAKAKRLYGCTECGATFPKWAGQCADCGAWNTLVETMIESGGAAAPSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGLPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETIIA
TARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=210970 BUQ73_RS02490 WP_060485566.1 530625..531992(+) (radA) [Pseudomonas putida strain AA7]
ATGGCCAAGGCCAAGCGTTTGTATGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCCGGCCAGTGTGCCGACTG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAAAGCGGCGGCGCGGCGGCCCCCAGCGGCCGCGCCGGCTGGACCG
GGCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGCTTCACCACCAGCAGCACCGAACTC
GACCGCGTACTCGGTGGCGGCCTGGTCGATGGCTCGGTGGTGTTGATCGGCGGTGACCCGGGGATCGGCAAATCGACCAT
CCTGCTGCAGACACTGTGCAACATCGCCGTGGGCCTGCCGGCGCTGTACGTCACCGGTGAGGAGTCGCAACAACAGGTGG
CCATGCGCTCGCGGCGCCTGGGCTTGCCCCAGGACCAGCTCAAGGTGATGACTGAGACCTGCATCGAAACCATCATCGCC
ACTGCGCGGGTAGAAAAGCCGCGGGTCATGGTGATCGACTCGATCCAGACCATCTTTACCGAGCAGTTGCAGTCCGCCCC
CGGTGGCGTGGCCCAGGTGCGCGAAAGCACGGCCTTGCTGGTGCGTTATGCCAAGCAGAGTGGCACGGCGATCTTCCTGG
TCGGCCACGTCACCAAGGAGGGCTCGCTGGCAGGGCCGCGGGTGCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAG
GGTGAGTCCGACGGCCGCCTGCGGCTGTTGCGGGCAGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGTGTTCGG
CATGACCGACCGTGGCCTGAAAGAGGTTTCCAACCCCTCTGCGATCTTCCTCAATCGCACCCAGGAAGAAGTGCCGGGGA
GTGTGGTCATGGCCACCTGGGAAGGCACCCGGCCAATGCTGGTAGAGGTGCAGGCACTGGTCGATGACAGCCACCTGGCC
AACCCTCGGCGGGTCACCCTGGGCCTGGACCAGAATCGCCTGGCCATGCTGCTGGCGGTACTGCACCGCCATGGTGGCAT
TCCTACCCATGACCAGGACGTGTTTCTTAACGTGGTCGGTGGGGTGAAGGTGCTGGAGACGGCTTCGGACCTGGCGCTGC
TGGCAGCGGTGATGTCCAGCCTGCGCAACCGGCCGTTGGCCCATGGGCTGCTGGTGTTTGGCGAGATTGGCTTGTCGGGC
GAGGTGCGGCCTGTGCCCAGTGGCCAGGAGCGTCTGAAGGAGGCGGCCAAGCACGGCTTCAAGCGCGCAATCGTGCCCAA
GGGCAATGCGCCGAAGGAGCCGCCAGCGGGGTTGCAGGTGATTGCAGTGACCCGGTTGGAGCAGGCTCTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)

Subunit ChlI of Mg-chelatase (ChlI)

(354-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A315SVN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.488
  radA Streptococcus pneumoniae Rx1

46.187

100

0.466
  radA Streptococcus pneumoniae R6

46.187

100

0.466
  radA Streptococcus pneumoniae TIGR4

46.187

100

0.466
  radA Streptococcus pneumoniae D39

46.187

100

0.466
  radA Streptococcus mitis SK321

46.374

100

0.464
  radA Streptococcus mitis NCTC 12261

46.154

100

0.462

Multiple sequence alignment