Detailed information NTG0210965

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CR537_RS05860
• Genome accession: NZ_CP024138
• Coordinates: 1149476..1150468 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 14EC020
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1144476..1155468

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CR537_RS05830 (CR537_05840)	ispD	1144537..1145247 (+)	711	WP_000246133.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CR537_RS05835 (CR537_05845)	ispF	1145247..1145726 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CR537_RS05840 (CR537_05850)	truD	1145723..1146772 (+)	1050	WP_000568955.1	tRNA pseudouridine(13) synthase TruD	-
CR537_RS05845 (CR537_05855)	surE	1146753..1147514 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CR537_RS05850 (CR537_05860)	pcm	1147508..1148134 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
CR537_RS05855 (CR537_05865)	nlpD	1148319..1149413 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CR537_RS05860 (CR537_05870)	rpoS	1149476..1150468 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CR537_RS05865 (CR537_05875)	-	1150589..1150996 (-)	408	WP_001208064.1	MarR family transcriptional regulator	-
CR537_RS05870 (CR537_05880)	-	1151143..1151736 (+)	594	WP_000767730.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CR537_RS05875 (CR537_05885)	-	1151736..1153163 (+)	1428	WP_000863185.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CR537_RS05880 (CR537_05890)	-	1153174..1153410 (+)	237	WP_000562976.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CR537_RS05885 (CR537_05895)	ygbN	1153448..1154812 (-)	1365	WP_000104432.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=210965 CR537_RS05860 WP_000081550.1 1149476..1150468(+) (rpoS) [Escherichia coli strain 14EC020]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=210965 CR537_RS05860 WP_000081550.1 1149476..1150468(+) (rpoS) [Escherichia coli strain 14EC020]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715