Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BUQ72_RS20280 Genome accession   NZ_CP018845
Coordinates   4555487..4556983 (-) Length   498 a.a.
NCBI ID   WP_079218189.1    Uniprot ID   -
Organism   Herbaspirillum robiniae strain AA6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4550487..4561983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ72_RS20260 - 4552813..4553571 (+) 759 WP_079218185.1 SDR family oxidoreductase -
  BUQ72_RS20265 - 4553659..4554243 (-) 585 WP_079218186.1 UbiX family flavin prenyltransferase -
  BUQ72_RS20270 grxD 4554286..4554597 (-) 312 WP_079218187.1 Grx4 family monothiol glutaredoxin -
  BUQ72_RS20275 hpf 4554990..4555343 (-) 354 WP_079218188.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  BUQ72_RS20280 rpoN/rpoN1 4555487..4556983 (-) 1497 WP_079218189.1 RNA polymerase factor sigma-54 Machinery gene
  BUQ72_RS20285 lptB 4557067..4557807 (-) 741 WP_079218190.1 LPS export ABC transporter ATP-binding protein -
  BUQ72_RS20290 lptA 4557809..4558396 (-) 588 WP_079218191.1 lipopolysaccharide transport periplasmic protein LptA -
  BUQ72_RS20295 lptC 4558440..4559048 (-) 609 WP_079218192.1 LPS export ABC transporter periplasmic protein LptC -
  BUQ72_RS20300 - 4559045..4559608 (-) 564 WP_079218193.1 KdsC family phosphatase -
  BUQ72_RS20305 - 4559608..4560636 (-) 1029 WP_079218194.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55232.73 Da        Isoelectric Point: 5.1177

>NTDB_id=210965 BUQ72_RS20280 WP_079218189.1 4555487..4556983(-) (rpoN/rpoN1) [Herbaspirillum robiniae strain AA6]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRLLADGAVSSSPSSGVAETGGD
GNADASAPAASGDGESSFEYQDNAPENAVSGEAEWSFDDVARSGKSSDDEDARPQLEAHEITLREHLLEQIRVTARTHRD
RALLELLTDALDDSGYLEEPLEDILARLPEELGIDLEELAISLKLLQSLDPAGVGARSPSECLALQIRRLPKVPFVTRKL
ALKIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQAVIRQCRPHPGAEFARDASDYVVPDVIVKQTKSGWQVLLNHDVMP
KLRVNAMYASALKQSKGEVSLTSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHE
STISRVTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTV
AKYREVLKIPPVNLRKSL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=210965 BUQ72_RS20280 WP_079218189.1 4555487..4556983(-) (rpoN/rpoN1) [Herbaspirillum robiniae strain AA6]
ATGAAACAGTCGCTCCAGTTACGTACCTCGCAGCATCTCGCATTGACGCCGCAATTGCAGCAGTCGATCAGGCTGCTGCA
ATTGTCGACCCTGGAGCTGCATCAGGAGCTGGAGCAGATCCTGTCGGACAATCCGCTGCTCGAGCGCCTGGACGACGCGC
TGGACAATTCCGTGCGCCTGCTGGCCGACGGCGCGGTGTCCTCCTCGCCCTCCAGCGGCGTGGCCGAAACCGGCGGCGAC
GGCAACGCCGATGCCTCGGCCCCCGCCGCCAGCGGCGACGGCGAATCCAGTTTCGAATACCAGGACAACGCCCCCGAGAA
CGCCGTCAGCGGCGAAGCGGAATGGAGCTTCGACGATGTCGCCCGCAGCGGCAAATCGTCGGACGACGAAGACGCGCGCC
CGCAGCTGGAAGCACACGAAATCACGCTGCGCGAACACCTGCTGGAGCAGATCCGCGTGACCGCGCGCACCCATCGCGAC
CGCGCACTGCTGGAACTGCTCACCGACGCGCTGGACGACAGCGGCTATCTTGAAGAGCCGCTGGAAGACATCCTCGCACG
CCTGCCCGAAGAGCTGGGCATCGATCTCGAAGAACTGGCGATATCGCTCAAGCTGCTGCAGAGCCTGGACCCGGCCGGGG
TCGGCGCGCGTAGCCCCAGCGAATGCCTGGCGCTGCAGATCCGCCGCCTGCCCAAGGTGCCGTTCGTGACGCGCAAGCTG
GCGCTCAAGATCGTGGAAGACTACCTGCCGCTGTTCGCGCAGCGCGACTTCAACAAGATCAAGAAGGCGCTCGACTGCGA
CGACGAGGACCTGCGCGAAGCGCAGGCGGTGATCCGCCAGTGCCGTCCGCACCCCGGCGCGGAATTCGCGCGCGACGCTT
CCGACTATGTGGTGCCGGACGTGATTGTCAAACAGACAAAGAGCGGCTGGCAGGTCCTGCTCAACCATGACGTGATGCCC
AAGTTGCGCGTGAACGCCATGTATGCGAGCGCGCTGAAGCAGTCCAAAGGCGAAGTTTCCCTCACGTCACAGCTGCAGGA
AGCGAAGTGGCTGATCAAGAATATGCGGCAACGTTTCGATACAATTTTGCGCGTCGCCCAGGCTATTGTCGAACGTCAAA
GAAATTTCTTTTCGCACGGCGCCGTTGCCATGCGCCCCCTTGTGCTGCGTGAAATTGCTGATACACTGGGTCTACACGAG
AGCACAATCTCTCGGGTGACGACTCAGAAATACATGCTTACGCCGCACGGCATGTTTGAGTTGAAATACTTCTTCGGCAG
CCACGTCGCAACGGAAACCGGAGGTGAAGCTTCCTCCACCGCGATCCGGGCGCTGATCAAACAGTTGATAGGAGCTGAAA
ACCCGCAGACCCCATTATCCGATAGCAAGATTGCGGATATGCTGGCAGAACAAGGCATGGTGGTCGCGCGACGCACAGTC
GCTAAATACCGCGAAGTGCTGAAGATTCCACCAGTCAATCTCCGCAAATCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-328)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(341-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

58.858

100

0.6

Multiple sequence alignment