Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BUQ72_RS05485 Genome accession   NZ_CP018845
Coordinates   1256201..1257586 (-) Length   461 a.a.
NCBI ID   WP_079215153.1    Uniprot ID   -
Organism   Herbaspirillum robiniae strain AA6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1251201..1262586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUQ72_RS05455 - 1251303..1252106 (+) 804 WP_079215147.1 cystine ABC transporter substrate-binding protein -
  BUQ72_RS05460 - 1252208..1252867 (+) 660 WP_175354529.1 amino acid ABC transporter permease -
  BUQ72_RS05465 - 1253000..1253284 (-) 285 WP_079215149.1 hypothetical protein -
  BUQ72_RS05470 ompR 1253468..1254229 (+) 762 WP_079215150.1 two-component system response regulator OmpR -
  BUQ72_RS05475 - 1254273..1255634 (+) 1362 WP_079215151.1 sensor histidine kinase -
  BUQ72_RS05480 - 1255627..1256187 (+) 561 WP_079215152.1 flagellar protein FlhE -
  BUQ72_RS05485 radA 1256201..1257586 (-) 1386 WP_079215153.1 DNA repair protein RadA Machinery gene
  BUQ72_RS05490 - 1257633..1259021 (-) 1389 WP_079215154.1 L-cystine transporter -
  BUQ72_RS05495 alr 1259128..1260207 (-) 1080 WP_079215155.1 alanine racemase -
  BUQ72_RS05500 lplT 1260430..1261698 (+) 1269 WP_079215156.1 lysophospholipid transporter LplT -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 48886.33 Da        Isoelectric Point: 7.1754

>NTDB_id=210954 BUQ72_RS05485 WP_079215153.1 1256201..1257586(-) (radA) [Herbaspirillum robiniae strain AA6]
MAKLKTHYTCTECGGVSNKWAGQCAACGQWNTLVETVAETAGVNRYSSQPQSLAQTAPVLSLADIEAIDVPRFGTGIEEF
DRVLGGGLVPGGVALIGGDPGIGKSTLLLQALANISKLKKVLYVSGEESGSQIALRAKRLAVDARDLQLQAEIQLEKILG
TLAEHKPEVAVIDSIQTIYSDALTSAPGSVAQVRECAAQLTRAAKTSGITIIMVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLVRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHENQVPGSCVMVTQEGTRPLLVEIQALVDSSHVP
NARRLSVGLEQNRLAMLLAVLHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLMAINSSMRNKPLPRGLVVFGEVGLAG
EIRPAPRGQERLREAAKLGFSIAVIPKANAPKQPIEGLKVIAVERIDDALQKSREIDDLAG

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=210954 BUQ72_RS05485 WP_079215153.1 1256201..1257586(-) (radA) [Herbaspirillum robiniae strain AA6]
ATGGCGAAGCTCAAGACCCATTACACCTGCACCGAGTGCGGTGGCGTCAGCAACAAATGGGCGGGGCAGTGCGCGGCTTG
CGGGCAATGGAACACCCTGGTCGAGACTGTGGCTGAAACGGCGGGAGTAAACCGCTATTCCTCGCAACCGCAGAGCCTGG
CGCAGACCGCGCCGGTACTCAGCCTGGCCGACATCGAGGCGATCGACGTGCCACGCTTCGGCACCGGCATCGAGGAGTTC
GACCGCGTCCTGGGCGGCGGCCTGGTGCCGGGCGGCGTGGCGCTGATCGGCGGTGACCCCGGCATCGGCAAGTCGACGCT
GCTGCTGCAGGCGCTGGCCAATATTTCCAAGCTCAAGAAGGTGCTCTACGTGAGCGGCGAAGAGTCCGGCTCGCAGATCG
CGCTGCGCGCCAAGCGGCTGGCCGTGGACGCGCGCGACCTGCAGCTGCAGGCCGAGATCCAGCTGGAAAAGATCCTGGGC
ACGCTGGCCGAGCACAAGCCGGAAGTGGCGGTGATCGACTCCATCCAGACCATCTACTCCGATGCGCTGACCTCGGCGCC
CGGCTCGGTGGCGCAGGTGCGCGAATGCGCCGCGCAGCTCACGCGCGCGGCCAAGACCTCGGGCATCACCATCATCATGG
TCGGCCACGTGACCAAGGAAGGCGCGCTGGCCGGCCCACGCGTGCTGGAGCACATCGTCGACACGGTGCTGTACTTCGAA
GGAGATACGCACTCCAGTTTCCGTCTGGTGCGGGCGTTCAAGAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGC
GATGACGGAGAAGGGCCTCAAGGGCGTCTCCAATCCTTCGGCGCTGTTCCTCTCGCAGCACGAGAACCAGGTGCCGGGCT
CCTGCGTGATGGTCACGCAGGAAGGCACGCGGCCGCTGCTGGTGGAAATCCAGGCGCTGGTCGACAGCTCGCACGTGCCC
AATGCGCGGCGCCTGTCGGTGGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCGGTGTTGCATCGCCACGCCGGCAT
CGCCGCGTTCGACCAGGACGTCTTCATCAATGCGGTGGGCGGCGTCAAGATCACCGAGCCGGCGGCCGACCTGGCCGTGC
TGATGGCGATCAACTCCTCGATGCGCAACAAGCCGCTGCCGCGCGGCCTGGTGGTGTTCGGCGAAGTCGGCCTGGCCGGC
GAGATCCGTCCGGCGCCGCGCGGCCAGGAGCGCCTGCGCGAGGCGGCCAAGCTGGGCTTCTCGATTGCGGTGATTCCCAA
GGCGAACGCGCCCAAGCAGCCGATCGAAGGCTTGAAGGTGATTGCAGTGGAGCGCATCGACGATGCGCTGCAGAAGTCGC
GCGAGATCGACGACCTCGCCGGCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-452)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.918

100

0.49
  radA Streptococcus mitis SK321

48.238

98.482

0.475
  radA Streptococcus pneumoniae Rx1

47.921

99.132

0.475
  radA Streptococcus pneumoniae TIGR4

47.921

99.132

0.475
  radA Streptococcus pneumoniae D39

47.921

99.132

0.475
  radA Streptococcus pneumoniae R6

47.921

99.132

0.475
  radA Streptococcus mitis NCTC 12261

48.124

98.265

0.473

Multiple sequence alignment