Detailed information    

insolico Bioinformatically predicted

Overview

Name   braS   Type   Regulator
Locus tag   BUM85_RS12930 Genome accession   NZ_CP018842
Coordinates   2562548..2563444 (+) Length   298 a.a.
NCBI ID   WP_002475631.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 14.1.R1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2557548..2568444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BUM85_RS12910 (BUM85_12935) - 2558233..2559777 (+) 1545 WP_002475727.1 NAD(P)H-binding protein -
  BUM85_RS12915 (BUM85_12940) - 2559901..2561370 (-) 1470 WP_002474877.1 alkaline phosphatase -
  BUM85_RS12920 (BUM85_12945) - 2561667..2561846 (+) 180 WP_002475662.1 hypothetical protein -
  BUM85_RS12925 (BUM85_12950) braR 2561877..2562542 (+) 666 WP_002475664.1 response regulator transcription factor Regulator
  BUM85_RS12930 (BUM85_12955) braS 2562548..2563444 (+) 897 WP_002475631.1 sensor histidine kinase Regulator
  BUM85_RS12935 (BUM85_12960) - 2563555..2564304 (+) 750 WP_002475632.1 ABC transporter ATP-binding protein -
  BUM85_RS12940 (BUM85_12965) - 2564306..2566318 (+) 2013 WP_002475665.1 ABC transporter permease -
  BUM85_RS12945 (BUM85_12970) - 2566422..2567012 (+) 591 WP_002447015.1 DUF4064 domain-containing protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 34931.55 Da        Isoelectric Point: 6.7743

>NTDB_id=210950 BUM85_RS12930 WP_002475631.1 2562548..2563444(+) (braS) [Staphylococcus epidermidis strain 14.1.R1]
MKFAYIQSIRNEISIILIILLFFALIFYVFSLPFDAYVLAISIILLLMCVRWWIKYLNFKKNEHLKDKVAYLEHELAHVK
NQQIEYRNDVESYFLTWVHQIKTPITASQLLLERNEENVVNRVRQEIVHIDNYTSLALSYLKLLNEESDMTITKVTVDDL
IRPLILKYRIQFIEQKTQIHYEKSEDIILTDTQWASIMIEQLLNNALKYAKGKDIWIDFDVANQTLQIKDNGIGISKADI
PKIFDKGYSGFNGRLNEQSTGIGLFIVQHIANHLNIQVTVQSELNQGTVFFIHFTKEK

Nucleotide


Download         Length: 897 bp        

>NTDB_id=210950 BUM85_RS12930 WP_002475631.1 2562548..2563444(+) (braS) [Staphylococcus epidermidis strain 14.1.R1]
ATGAAGTTTGCATATATTCAATCGATTCGTAATGAGATTTCAATTATTTTAATAATTCTATTATTTTTTGCACTTATATT
TTATGTATTTTCTTTACCTTTTGATGCATACGTACTAGCAATCAGTATCATATTACTATTGATGTGTGTACGTTGGTGGA
TAAAGTATTTAAATTTTAAAAAGAACGAACATCTTAAAGATAAAGTGGCATATTTAGAACATGAGTTAGCACATGTTAAG
AATCAGCAAATTGAATATCGTAACGATGTTGAAAGTTATTTTTTAACATGGGTACATCAAATTAAAACACCTATTACTGC
CTCACAATTACTTTTGGAGAGAAACGAGGAGAATGTAGTTAATCGTGTTAGACAAGAAATTGTGCACATTGATAATTACA
CAAGCCTCGCATTAAGTTATTTAAAATTATTAAATGAAGAGTCAGATATGACAATTACCAAAGTGACAGTTGATGATTTG
ATTCGCCCGTTGATTTTAAAATATAGAATTCAGTTTATTGAACAAAAGACGCAAATCCATTATGAAAAAAGTGAGGACAT
CATTTTAACCGATACACAATGGGCTTCTATAATGATAGAGCAACTTTTAAATAATGCTTTAAAATATGCTAAAGGTAAAG
ATATATGGATAGATTTTGATGTTGCCAATCAAACTCTACAGATTAAAGATAATGGTATTGGGATTAGTAAAGCAGATATT
CCTAAAATTTTTGATAAAGGATACTCAGGATTTAACGGTAGATTGAATGAACAATCAACAGGTATAGGTTTATTTATAGT
GCAACACATTGCAAATCATTTAAATATACAAGTAACTGTACAATCAGAGTTAAATCAGGGGACAGTATTTTTTATACATT
TTACTAAAGAAAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(197-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braS Staphylococcus aureus N315

60

98.993

0.594

Multiple sequence alignment