Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR537_RS00870 Genome accession   NZ_CP024138
Coordinates   161402..162070 (+) Length   222 a.a.
NCBI ID   WP_001318112.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 156402..167070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR537_RS00835 (CR537_00840) yicC 156421..157284 (-) 864 WP_000621330.1 YicC/YloC family endoribonuclease -
  CR537_RS00845 (CR537_00850) rph 157411..158127 (+) 717 WP_001247093.1 ribonuclease PH -
  CR537_RS00850 (CR537_00855) pyrE 158193..158834 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CR537_RS00855 (CR537_00860) slmA 158871..159467 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CR537_RS00860 (CR537_00865) dut 159574..160032 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CR537_RS00865 (CR537_00870) coaBC 160010..161230 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CR537_RS00870 (CR537_00875) radC 161402..162070 (+) 669 WP_001318112.1 DNA repair protein RadC Machinery gene
  CR537_RS00875 (CR537_00880) rpmB 162287..162523 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CR537_RS00880 (CR537_00885) rpmG 162544..162711 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CR537_RS00885 (CR537_00890) mutM 162809..163618 (+) 810 WP_001114537.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CR537_RS00890 (CR537_00895) coaD 163657..164136 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  CR537_RS00895 (CR537_00900) waaA 164144..165421 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CR537_RS00900 (CR537_00905) rfaQ 165834..166892 (+) 1059 WP_000360409.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.36 Da        Isoelectric Point: 7.9755

>NTDB_id=210946 CR537_RS00870 WP_001318112.1 161402..162070(+) (radC) [Escherichia coli strain 14EC020]
MKNNAQLLMPREKMLRFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=210946 CR537_RS00870 WP_001318112.1 161402..162070(+) (radC) [Escherichia coli strain 14EC020]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAGGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCTTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496