Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR536_RS10340 Genome accession   NZ_CP024134
Coordinates   1951441..1951917 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1946441..1956917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR536_RS30190 - 1946567..1947065 (-) 499 Protein_1888 transposase -
  CR536_RS10310 (CR536_10230) istA 1947259..1948572 (+) 1314 Protein_1889 IS21-like element ISEc12 family transposase -
  CR536_RS10320 (CR536_10240) - 1950013..1950165 (-) 153 Protein_1891 DUF5983 family protein -
  CR536_RS10325 (CR536_10245) - 1950162..1950536 (-) 375 WP_000854765.1 TA system toxin CbtA family protein -
  CR536_RS10330 (CR536_10250) - 1950626..1950994 (-) 369 WP_001315620.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CR536_RS10335 (CR536_10255) - 1951157..1951378 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  CR536_RS10340 (CR536_10260) radC 1951441..1951917 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  CR536_RS10345 (CR536_10265) - 1951933..1952406 (-) 474 WP_000855059.1 antirestriction protein -
  CR536_RS10350 (CR536_10270) - 1952443..1954056 (-) 1614 WP_000080195.1 IS66-like element ISEc23 family transposase -
  CR536_RS10355 (CR536_10275) tnpB 1954087..1954437 (-) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  CR536_RS10360 (CR536_10280) - 1954434..1954796 (-) 363 WP_001299377.1 transposase -
  CR536_RS10365 (CR536_10285) - 1954859..1956072 (+) 1214 WP_162895303.1 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=210896 CR536_RS10340 WP_001186774.1 1951441..1951917(-) (radC) [Escherichia coli strain 14EC017]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210896 CR536_RS10340 WP_001186774.1 1951441..1951917(-) (radC) [Escherichia coli strain 14EC017]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399