Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CR536_RS10210 Genome accession   NZ_CP024134
Coordinates   1932645..1934069 (-) Length   474 a.a.
NCBI ID   WP_101979661.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC017     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927645..1939069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR536_RS10180 (CR536_10105) yeeZ 1927700..1928524 (+) 825 WP_021570404.1 SDR family oxidoreductase -
  CR536_RS10185 (CR536_10110) yeeY 1928570..1929499 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CR536_RS10190 (CR536_10115) yoeI 1929714..1929776 (+) 63 WP_010723108.1 membrane protein YoeI -
  CR536_RS10195 (CR536_10120) plaP 1929766..1931124 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CR536_RS10200 (CR536_10125) tsuA 1931303..1932361 (+) 1059 WP_024207725.1 thiosulfate utilization transporter TsuA/YeeE -
  CR536_RS10205 (CR536_10130) tsuB 1932375..1932602 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CR536_RS10210 (CR536_10135) sbcB 1932645..1934069 (-) 1425 WP_101979661.1 exodeoxyribonuclease I Machinery gene
  CR536_RS10215 (CR536_10140) - 1934251..1935105 (+) 855 Protein_1875 integrase family protein -
  CR536_RS10235 (CR536_10160) - 1936022..1936600 (+) 579 WP_021570408.1 hypothetical protein -
  CR536_RS10240 (CR536_10165) - 1936642..1937400 (-) 759 WP_199560352.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54353.62 Da        Isoelectric Point: 5.3476

>NTDB_id=210895 CR536_RS10210 WP_101979661.1 1932645..1934069(-) (sbcB) [Escherichia coli strain 14EC017]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG
NTSWVVPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=210895 CR536_RS10210 WP_101979661.1 1932645..1934069(-) (sbcB) [Escherichia coli strain 14EC017]
ATGACAGACACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCTG
ATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AATACCAGCTGGGTGGTACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

99.156

0.589