Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LPG_RS04605 Genome accession   NC_002942
Coordinates   1003747..1004295 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila str. Philadelphia     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 998747..1009295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPG_RS04595 (lpg0926) ravI 1001252..1002262 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  LPG_RS04600 (lpg0927) pilM 1002679..1003743 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  LPG_RS04605 (lpg0928) pilN 1003747..1004295 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  LPG_RS04610 (lpg0929) pilO 1004309..1004908 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPG_RS04615 (lpg0930) pilP 1004905..1005492 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  LPG_RS04620 (lpg0931) pilQ 1005496..1007592 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  LPG_RS04625 (lpg0932) aroK 1008044..1008565 (+) 522 WP_027219629.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=21089 LPG_RS04605 WP_010946663.1 1003747..1004295(+) (pilN) [Legionella pneumophila subsp. pneumophila str. Philadelphia]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=21089 LPG_RS04605 WP_010946663.1 1003747..1004295(+) (pilN) [Legionella pneumophila subsp. pneumophila str. Philadelphia]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment