Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CR536_RS05900 Genome accession   NZ_CP024134
Coordinates   1124343..1124858 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 14EC017     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1119343..1129858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR536_RS05855 (CR536_05840) csrA 1119930..1120115 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CR536_RS05885 (CR536_05870) yqaB 1121573..1122139 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CR536_RS05890 (CR536_05875) yqaA 1122136..1122564 (+) 429 WP_001287454.1 YqaA family protein -
  CR536_RS05895 (CR536_05880) gshA 1122637..1124193 (+) 1557 WP_101979616.1 glutamate--cysteine ligase -
  CR536_RS05900 (CR536_05885) luxS 1124343..1124858 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CR536_RS05905 (CR536_05890) emrB 1124922..1126460 (-) 1539 WP_077476078.1 multidrug efflux MFS transporter permease subunit EmrB -
  CR536_RS05910 (CR536_05895) emrA 1126477..1127649 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CR536_RS05915 (CR536_05900) emrR 1127776..1128306 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CR536_RS05920 (CR536_05905) ygaH 1128397..1128732 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CR536_RS05925 (CR536_05910) ygaZ 1128722..1129459 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=210884 CR536_RS05900 WP_001130211.1 1124343..1124858(+) (luxS) [Escherichia coli strain 14EC017]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=210884 CR536_RS05900 WP_001130211.1 1124343..1124858(+) (luxS) [Escherichia coli strain 14EC017]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGATGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731