Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR535_RS09720 Genome accession   NZ_CP024131
Coordinates   1872312..1872788 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1867312..1877788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR535_RS09675 (CR535_09605) sbmC 1867805..1868278 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CR535_RS09680 (CR535_09610) yeeA 1868476..1869534 (+) 1059 WP_069905506.1 FUSC family protein -
  CR535_RS09685 (CR535_09615) tmaR 1869706..1870035 (+) 330 WP_000450409.1 DUF496 family protein -
  CR535_RS09690 (CR535_09620) - 1870136..1870318 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CR535_RS09695 (CR535_09625) - 1870372..1870518 (+) 147 Protein_1781 transposase domain-containing protein -
  CR535_RS28945 - 1870807..1870887 (-) 81 Protein_1782 hypothetical protein -
  CR535_RS09700 (CR535_09630) yeeW 1870933..1871127 (-) 195 WP_000988600.1 DUF5983 family protein -
  CR535_RS09705 (CR535_09635) - 1871189..1871497 (-) 309 Protein_1784 TA system toxin CbtA family protein -
  CR535_RS09710 (CR535_09640) cbeA 1871586..1871954 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CR535_RS09715 (CR535_09645) yeeT 1872028..1872249 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CR535_RS09720 (CR535_09650) radC 1872312..1872788 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CR535_RS09725 (CR535_09655) - 1872804..1873283 (-) 480 WP_000860076.1 antirestriction protein -
  CR535_RS09730 (CR535_09660) - 1873365..1874186 (-) 822 WP_032325345.1 DUF932 domain-containing protein -
  CR535_RS09740 (CR535_09670) - 1874407..1874817 (-) 411 WP_000846713.1 hypothetical protein -
  CR535_RS09745 (CR535_09675) - 1874833..1875516 (-) 684 WP_000775500.1 hypothetical protein -
  CR535_RS09750 (CR535_09680) - 1875652..1876722 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CR535_RS09755 (CR535_09685) - 1876719..1877624 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=210815 CR535_RS09720 WP_001186773.1 1872312..1872788(-) (radC) [Escherichia coli strain 14EC007]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210815 CR535_RS09720 WP_001186773.1 1872312..1872788(-) (radC) [Escherichia coli strain 14EC007]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392