Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CR535_RS05915 Genome accession   NZ_CP024131
Coordinates   1129376..1129891 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 14EC007     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1124376..1134891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR535_RS05870 (CR535_05845) csrA 1124963..1125148 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CR535_RS05900 (CR535_05875) yqaB 1126606..1127172 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CR535_RS05905 (CR535_05880) yqaA 1127169..1127597 (+) 429 WP_001287454.1 YqaA family protein -
  CR535_RS05910 (CR535_05885) gshA 1127670..1129226 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CR535_RS05915 (CR535_05890) luxS 1129376..1129891 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CR535_RS05920 (CR535_05895) emrB 1129955..1131493 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CR535_RS05925 (CR535_05900) emrA 1131510..1132682 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CR535_RS05930 (CR535_05905) emrR 1132809..1133339 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CR535_RS05935 (CR535_05910) ygaH 1133430..1133765 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CR535_RS05940 (CR535_05915) ygaZ 1133755..1134492 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=210804 CR535_RS05915 WP_001130211.1 1129376..1129891(+) (luxS) [Escherichia coli strain 14EC007]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=210804 CR535_RS05915 WP_001130211.1 1129376..1129891(+) (luxS) [Escherichia coli strain 14EC007]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGATGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment