Detailed information NTG0210801

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CR535_RS05640
• Genome accession: NZ_CP024131
• Coordinates: 1076557..1077549 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 14EC007
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1071557..1082549

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CR535_RS05610 (CR535_05580)	ispD	1071618..1072328 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CR535_RS05615 (CR535_05585)	ispF	1072328..1072807 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CR535_RS05620 (CR535_05590)	truD	1072804..1073853 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CR535_RS05625 (CR535_05595)	surE	1073834..1074595 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CR535_RS05630 (CR535_05600)	pcm	1074589..1075215 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CR535_RS05635 (CR535_05605)	nlpD	1075400..1076494 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CR535_RS05640 (CR535_05610)	rpoS	1076557..1077549 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CR535_RS05645 (CR535_05615)	ygbN	1077643..1079007 (-)	1365	WP_000104429.1	GntP family transporter	-
CR535_RS05650 (CR535_05620)	ygbM	1079096..1079872 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
CR535_RS05655 (CR535_05625)	ygbL	1079877..1080515 (-)	639	WP_001278994.1	aldolase	-
CR535_RS05660 (CR535_05630)	otnK	1080512..1081774 (-)	1263	WP_000590404.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=210801 CR535_RS05640 WP_000081550.1 1076557..1077549(+) (rpoS) [Escherichia coli strain 14EC007]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=210801 CR535_RS05640 WP_000081550.1 1076557..1077549(+) (rpoS) [Escherichia coli strain 14EC007]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715