Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   BSQ33_RS16750 Genome accession   NZ_CP018836
Coordinates   237024..238106 (+) Length   360 a.a.
NCBI ID   WP_088134717.1    Uniprot ID   A0A1Z2SJW5
Organism   Vibrio gazogenes strain ATCC 43942     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 232024..243106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS16715 (BSQ33_16775) - 232564..232977 (+) 414 WP_088135282.1 NUDIX hydrolase -
  BSQ33_RS16720 (BSQ33_16780) - 233080..233553 (-) 474 WP_021018698.1 peroxiredoxin -
  BSQ33_RS16725 (BSQ33_16785) - 233831..234148 (-) 318 WP_021018699.1 DUF496 family protein -
  BSQ33_RS16735 (BSQ33_16795) - 234776..235429 (+) 654 WP_021018701.1 YceH family protein -
  BSQ33_RS16740 (BSQ33_16800) - 235436..235735 (+) 300 WP_021018702.1 GIY-YIG nuclease family protein -
  BSQ33_RS16745 (BSQ33_16805) traF 235802..236947 (+) 1146 WP_021018703.1 conjugal transfer protein TraF -
  BSQ33_RS16750 (BSQ33_16810) luxP 237024..238106 (+) 1083 WP_088134717.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  BSQ33_RS16755 (BSQ33_16815) luxQ 238147..240729 (+) 2583 WP_021018705.1 LuxQ periplasmic sensor domain-containing protein Regulator
  BSQ33_RS16760 (BSQ33_16820) - 240818..241345 (-) 528 WP_232472015.1 hypothetical protein -
  BSQ33_RS16765 (BSQ33_16825) - 241522..242997 (+) 1476 WP_088134718.1 cobyric acid synthase -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41247.97 Da        Isoelectric Point: 6.6387

>NTDB_id=210794 BSQ33_RS16750 WP_088134717.1 237024..238106(+) (luxP) [Vibrio gazogenes strain ATCC 43942]
MRFFGVILTTCFLVYHSAAYALSGYWHYNEFLDLNPEQKQLTLSLANAVRLEPKPLQATQTRPVKISVIYPGQQVSDYWS
RNILAFESRLNELDIKYEIHQVFTRPNMDIRQQSLSLMEALKNKSDYLIFTLDTTRHRKFIEHVLRGRETKLILQNVTTP
VKDWAHQQPWMYIGFDHEIGTGMLVDYFKKTLNPHSPYSVLYFSQGYVSEARGDTFIQAMTGYPLVSSFYTQANQESAYK
ITLENLKEHPEIKLVYACSTDVALGAVKALKELGREDVLINGWGGGSAELAAIEHHDLDVTVMRMNDDTGVAMAEAIKWD
LEGKKVPTVYSGDFEVVSSADKPERVEALKQRAFRYSDRH

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=210794 BSQ33_RS16750 WP_088134717.1 237024..238106(+) (luxP) [Vibrio gazogenes strain ATCC 43942]
ATGAGATTTTTTGGCGTTATTTTAACCACCTGCTTCCTTGTGTATCATTCAGCAGCGTATGCGTTAAGTGGCTATTGGCA
TTACAACGAATTTCTTGATTTAAACCCTGAACAAAAGCAACTGACGCTCTCTTTGGCAAATGCGGTTCGGCTTGAGCCGA
AGCCGTTACAGGCAACTCAGACACGCCCAGTAAAAATATCTGTGATTTATCCCGGTCAGCAAGTCTCAGATTATTGGAGC
CGTAACATTCTGGCCTTTGAGTCACGCTTGAATGAATTGGATATCAAGTATGAAATTCATCAAGTGTTTACGCGGCCGAA
TATGGATATTCGTCAGCAAAGTCTGTCTTTGATGGAAGCGTTAAAGAATAAGTCCGACTATTTGATTTTTACGCTCGATA
CCACCAGACACAGAAAATTTATTGAACATGTGTTAAGAGGGCGGGAAACCAAACTCATTTTACAGAATGTGACGACACCA
GTGAAAGACTGGGCTCACCAACAACCCTGGATGTATATCGGCTTTGACCATGAAATTGGAACCGGTATGTTGGTGGATTA
TTTTAAGAAAACATTGAACCCCCATTCGCCTTATTCCGTGCTGTATTTTTCACAAGGTTATGTGAGTGAAGCCCGAGGAG
ATACCTTTATCCAAGCGATGACTGGATACCCGCTCGTATCATCGTTTTATACTCAGGCGAATCAGGAAAGTGCCTATAAA
ATCACGCTTGAGAATCTGAAAGAGCATCCAGAGATTAAATTGGTGTATGCCTGTTCAACGGATGTGGCTCTCGGTGCCGT
TAAAGCCTTAAAAGAGCTCGGCAGAGAGGACGTACTCATCAATGGTTGGGGGGGAGGATCTGCCGAATTAGCGGCGATAG
AGCATCATGATTTAGATGTCACCGTGATGCGAATGAACGATGATACGGGTGTTGCAATGGCTGAAGCCATCAAATGGGAT
CTTGAAGGGAAAAAAGTACCAACGGTTTACTCTGGGGACTTTGAGGTGGTTTCCAGTGCGGATAAACCCGAGCGAGTTGA
AGCGTTGAAACAACGTGCATTCCGGTATTCTGATCGACACTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(66-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z2SJW5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.706

99.167

0.642

Multiple sequence alignment