Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   BSQ33_RS16440 Genome accession   NZ_CP018836
Coordinates   162492..163667 (+) Length   391 a.a.
NCBI ID   WP_021019187.1    Uniprot ID   A0A1Z2SJV3
Organism   Vibrio gazogenes strain ATCC 43942     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 157492..168667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS16430 (BSQ33_16490) - 157863..159008 (+) 1146 WP_088134692.1 efflux RND transporter periplasmic adaptor subunit -
  BSQ33_RS16435 (BSQ33_16495) - 159005..162082 (+) 3078 WP_198298215.1 efflux RND transporter permease subunit -
  BSQ33_RS16440 (BSQ33_16500) cqsA 162492..163667 (+) 1176 WP_021019187.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  BSQ33_RS16445 (BSQ33_16505) - 163710..165407 (-) 1698 WP_232472011.1 hybrid sensor histidine kinase/response regulator -
  BSQ33_RS16450 (BSQ33_16510) - 166191..166664 (+) 474 WP_232472012.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 44113.62 Da        Isoelectric Point: 6.7663

>NTDB_id=210793 BSQ33_RS16440 WP_021019187.1 162492..163667(+) (cqsA) [Vibrio gazogenes strain ATCC 43942]
MNNISKYLPEFIQSKINFHIHDLIELNKNGKHLVLGKRPQSKDIVMQSNDYLCLANNSTIKHQMIDSIMRMDDSILMSGI
YLQDENSKPSIEHRLSEFTNFDSCLLSQSGWNANIGLLQAICAPDTNIYIDFFTHMSVWEGARYANAKVHPFMHNNMKHL
RKLIKRHGPGIIAVDSIYSTLGTIAPLKELVEIAKEFGCATVIDESHSLGIYGKHGAGLIEELNLSREVDFMTASLAKTF
AYRAGAIWANNNVNQCLPFVSYPAIFSSALLPYDIDTLGAILDLIYESDDRRERLFYLSDKLRKGLIQLGIKIRSQSQII
SLETGNENNTELVRDILENNGIFGAVFCRPATPKNSNLIRFSLNSSMTDNDIDKILSVCQLLVKNNEVFFK

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=210793 BSQ33_RS16440 WP_021019187.1 162492..163667(+) (cqsA) [Vibrio gazogenes strain ATCC 43942]
ATGAACAATATTAGTAAATATTTACCAGAGTTCATTCAGTCAAAGATAAATTTTCATATTCACGACTTAATTGAATTGAA
TAAAAATGGGAAACATCTTGTTTTAGGAAAGCGTCCCCAAAGCAAAGATATTGTAATGCAAAGTAATGACTATTTATGCT
TGGCAAATAATAGCACTATAAAGCACCAAATGATTGACTCAATTATGAGAATGGATGATAGTATCTTAATGTCAGGAATT
TATTTGCAAGATGAAAATTCAAAGCCCTCTATCGAGCATCGACTTTCAGAATTTACTAACTTTGATAGCTGCTTACTCTC
TCAATCAGGGTGGAATGCTAACATTGGGTTATTACAAGCAATTTGTGCTCCGGATACTAATATCTATATTGATTTTTTCA
CTCATATGTCAGTATGGGAGGGGGCTCGATATGCAAATGCGAAAGTACATCCGTTTATGCATAATAACATGAAGCATCTG
CGGAAATTGATTAAAAGACATGGCCCAGGAATTATTGCTGTCGATTCAATATACAGTACATTAGGTACGATCGCCCCCTT
AAAAGAGCTGGTTGAGATAGCAAAAGAGTTTGGCTGTGCGACCGTGATTGATGAATCGCACTCTTTAGGTATTTATGGTA
AACATGGGGCAGGTTTGATTGAAGAGCTGAATTTATCAAGAGAAGTTGACTTCATGACTGCTAGCCTGGCTAAAACTTTT
GCGTATAGAGCCGGTGCGATATGGGCAAATAATAATGTTAATCAGTGCTTACCTTTTGTAAGTTATCCTGCAATATTTAG
TTCTGCCTTATTGCCTTATGATATAGATACACTTGGAGCTATATTAGATTTAATTTATGAATCAGATGACCGAAGAGAAC
GTCTTTTTTATCTCTCGGATAAACTCAGGAAAGGACTCATTCAACTTGGTATTAAAATTAGAAGTCAATCTCAGATCATA
TCGTTAGAAACTGGAAATGAGAACAATACCGAGTTAGTCCGTGATATTTTAGAAAATAATGGAATATTTGGAGCTGTTTT
CTGCCGTCCCGCGACACCTAAGAATAGCAATCTAATTCGGTTTTCTTTGAATAGTTCTATGACTGATAATGACATTGATA
AAATATTGTCTGTCTGCCAGCTATTAGTCAAAAATAACGAGGTGTTTTTTAAATAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z2SJV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

64.062

98.21

0.629

Multiple sequence alignment