Detailed information NTG0210771

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BSQ33_RS05670
• Genome accession: NZ_CP018835
• Coordinates: 1245786..1246772 (-)
• Length: 328 a.a.
• NCBI ID: WP_088133598.1
• Uniprot ID: A0A1Z2SDJ9
• Organism: Vibrio gazogenes strain ATCC 43942
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1240786..1251772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSQ33_RS05655 (BSQ33_05665)	-	1240898..1242955 (+)	2058	WP_088133595.1	sensor histidine kinase	-
BSQ33_RS05660 (BSQ33_05670)	hpxO	1243016..1244170 (-)	1155	WP_088133596.1	FAD-dependent urate hydroxylase HpxO	-
BSQ33_RS05665 (BSQ33_05675)	-	1244648..1245697 (+)	1050	WP_198298155.1	pectate lyase	-
BSQ33_RS05670 (BSQ33_05680)	rpoS	1245786..1246772 (-)	987	WP_088133598.1	RNA polymerase sigma factor RpoS	Regulator
BSQ33_RS05675 (BSQ33_05685)	-	1246854..1247762 (-)	909	WP_088133599.1	peptidoglycan DD-metalloendopeptidase family protein	-
BSQ33_RS05680 (BSQ33_05690)	-	1247765..1248391 (-)	627	WP_072955843.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BSQ33_RS05685 (BSQ33_05695)	surE	1248397..1249137 (-)	741	WP_088133600.1	5'/3'-nucleotidase SurE	-
BSQ33_RS05690 (BSQ33_05700)	truD	1249141..1250187 (-)	1047	WP_088133601.1	tRNA pseudouridine(13) synthase TruD	-
BSQ33_RS05695 (BSQ33_05705)	ispF	1250268..1250741 (-)	474	WP_088133602.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BSQ33_RS05700 (BSQ33_05710)	ispD	1250791..1251483 (-)	693	WP_088133603.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BSQ33_RS05705 (BSQ33_05715)	ftsB	1251484..1251765 (-)	282	WP_088133604.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37721.54 Da
• Isoelectric Point: 4.6105

>NTDB_id=210771 BSQ33_RS05670 WP_088133598.1 1245786..1246772(-) (rpoS) [Vibrio gazogenes strain ATCC 43942]
MSKSNSVTKVDQFDFDSEAFDLNTLDNEVSSNATSVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIALELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide

• Length: 987 bp

>NTDB_id=210771 BSQ33_RS05670 WP_088133598.1 1245786..1246772(-) (rpoS) [Vibrio gazogenes strain ATCC 43942]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAATTTGATTTTGATTCAGAAGCGTTTGATCTCAATACATTGGACAA
TGAGGTCAGTTCTAACGCAACATCCGTCGAAACTCGGGAAGATTACGAAGTCACTTCCAAAAGTTTAGACGCGACTCAAC
TCTATTTAGGCGAAATTGGTTTTTCTCCTTTGTTAACCGCTGAGGAAGAAATCCTGTATGCACGTCGGGCTCTCCGAGGA
GATGAAGCCGCTCGTAAGCGCATGATTGAGAGTAATCTACGTCTCGTTGTTAAAATATCTCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTAATCGAAGAAGGCAACCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCAGAAAGAGGAT
TTCGCTTTTCTACGTATGCAACCTGGTGGATCCGGCAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATTCACGTTGTTAAAGAACTAAATATTTATTTACGGACAGCACGTGAGCTATCACAGAAGTTAGACCATGAACC
AACAGCGGAAGACATTGCGCTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTCCGCCTGAACGAACGAATTA
GTTCTGTTGACACACCGATTGGTGGTGATGGTGATAAAGCATTGTTGGATATTATTCCTGATGCAAAACACTATGACCCC
GAATATTCAACAGAAGATGATGATATCAAATCTTCACTGTTACATTGGTTAGATGAACTGAATCCGAAACAGAAAGAAGT
GTTGGCAAGACGCTTTGGTTTACTCGGATATGAACCATCCACTTTAGAAGAGGTTGGTAAAGAAATTAATCTAACCCGTG
AGCGAGTACGCCAAATCCAAGTTGAAGGCCTGCGTCGTTTAAGAGAAATTCTACTGAAACAAGGCTTGAACATGGAGTCT
TTGTTCGATGTAGAGAGTGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 3 (Sigma70_r3) (168-242)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A1Z2SDJ9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.831	100	0.838