Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   BSQ33_RS05455 Genome accession   NZ_CP018835
Coordinates   1198483..1199001 (-) Length   172 a.a.
NCBI ID   WP_088133568.1    Uniprot ID   A0A1Z2SDH8
Organism   Vibrio gazogenes strain ATCC 43942     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193483..1204001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ33_RS05430 (BSQ33_05440) rimM 1193558..1194112 (-) 555 WP_072955936.1 ribosome maturation factor RimM -
  BSQ33_RS05435 (BSQ33_05445) rpsP 1194135..1194383 (-) 249 WP_059121562.1 30S ribosomal protein S16 -
  BSQ33_RS05440 (BSQ33_05450) ffh 1194561..1195928 (-) 1368 WP_088133566.1 signal recognition particle protein -
  BSQ33_RS05445 (BSQ33_05455) - 1196181..1196975 (+) 795 WP_088133567.1 cytochrome C assembly family protein -
  BSQ33_RS05450 (BSQ33_05460) - 1197058..1198332 (+) 1275 WP_072955930.1 HlyC/CorC family transporter -
  BSQ33_RS05455 (BSQ33_05465) luxS 1198483..1199001 (-) 519 WP_088133568.1 S-ribosylhomocysteine lyase Regulator
  BSQ33_RS05460 (BSQ33_05470) gshA 1199153..1200754 (-) 1602 WP_088133569.1 glutamate--cysteine ligase -
  BSQ33_RS05465 (BSQ33_05475) - 1200848..1203691 (-) 2844 WP_088133570.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18963.74 Da        Isoelectric Point: 4.9766

>NTDB_id=210768 BSQ33_RS05455 WP_088133568.1 1198483..1199001(-) (luxS) [Vibrio gazogenes strain ATCC 43942]
MPLLDSFTVDHTRMHAPAVRVAKKMNTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLFAGFMRAHLNGNGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMQDVQKVEDQNKIPELNIYQCGTAAMHSLDEAKDIAKAVISSGISVNQNDDLA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=210768 BSQ33_RS05455 WP_088133568.1 1198483..1199001(-) (luxS) [Vibrio gazogenes strain ATCC 43942]
ATGCCATTATTAGATAGTTTTACGGTGGATCATACACGTATGCATGCCCCAGCCGTCCGTGTTGCGAAAAAAATGAATAC
CCCTAAAGGCGATACGATTACGGTGTTTGATTTACGCTTTACCGTACCAAATCAAGATATCCTTTCCGAGAAAGGTATTC
ATACACTAGAACACTTATTTGCAGGTTTTATGAGAGCTCATCTCAATGGTAACGGTGTTGAAATTATTGATATTTCCCCT
ATGGGATGCCGGACTGGCTTCTACATGAGCTTAATTGGTGTGCCTTCTGAGCAGCGAGTCGCTGATGCTTGGTTAGCTGC
AATGCAAGATGTGCAGAAGGTTGAAGACCAGAACAAAATCCCAGAGTTGAACATCTATCAATGCGGAACCGCAGCGATGC
ACTCTTTGGATGAGGCGAAGGATATTGCTAAAGCTGTCATTTCAAGTGGTATCAGCGTGAACCAGAATGATGATTTGGCG
CTGCCAGAATCAATGCTTCAGGAACTAAAAGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z2SDH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.211

99.419

0.837

Multiple sequence alignment