Detailed information NTG0210766

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: BSQ33_RS02340
• Genome accession: NZ_CP018835
• Coordinates: 530853..532277 (+)
• Length: 474 a.a.
• NCBI ID: WP_021021769.1
• Uniprot ID: A0A1Z2SBX8
• Organism: Vibrio gazogenes strain ATCC 43942
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	510851..532277	530853..532277	within	0

Gene organization within MGE regions

Location: 510851..532277

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSQ33_RS02205 (BSQ33_02225)	-	510851..511870 (-)	1020	WP_088133166.1	contractile injection system protein, VgrG/Pvc8 family	-
BSQ33_RS02210 (BSQ33_02230)	-	511861..512070 (-)	210	WP_027694413.1	tail protein X	-
BSQ33_RS02215 (BSQ33_02235)	-	512083..512463 (-)	381	WP_021021794.1	phage tail protein	-
BSQ33_RS02220 (BSQ33_02240)	-	512460..514841 (-)	2382	WP_088133167.1	phage tail tape measure protein	-
BSQ33_RS02225 (BSQ33_02245)	-	514964..515524 (-)	561	WP_072958471.1	phage tail assembly protein	-
BSQ33_RS02230 (BSQ33_02250)	-	515613..516119 (-)	507	WP_072958473.1	phage major tail tube protein	-
BSQ33_RS02235 (BSQ33_02255)	-	516119..517288 (-)	1170	WP_072958476.1	phage tail protein	-
BSQ33_RS02240 (BSQ33_02260)	-	517281..517478 (-)	198	WP_021021789.1	hypothetical protein	-
BSQ33_RS02245 (BSQ33_02265)	-	517574..517948 (-)	375	WP_021021788.1	phage tail assembly chaperone	-
BSQ33_RS02250 (BSQ33_02270)	-	517945..518739 (-)	795	WP_021021787.1	hypothetical protein	-
BSQ33_RS02255 (BSQ33_02275)	-	518837..519523 (-)	687	WP_021021786.1	hypothetical protein	-
BSQ33_RS02260 (BSQ33_02280)	-	519741..520268 (-)	528	WP_021021785.1	tail fiber protein	-
BSQ33_RS02265 (BSQ33_02285)	-	520677..520952 (-)	276	WP_021021783.1	hypothetical protein	-
BSQ33_RS02270 (BSQ33_02290)	-	520967..522199 (-)	1233	WP_232471946.1	SUMF1/EgtB/PvdO family nonheme iron enzyme	-
BSQ33_RS02275 (BSQ33_02295)	-	522342..522617 (-)	276	WP_088133169.1	hypothetical protein	-
BSQ33_RS02280 (BSQ33_02300)	-	522632..523864 (-)	1233	WP_232471947.1	SUMF1/EgtB/PvdO family nonheme iron enzyme	-
BSQ33_RS02285 (BSQ33_02305)	-	523855..524415 (-)	561	WP_021021779.1	hypothetical protein	-
BSQ33_RS02290 (BSQ33_02310)	-	524412..525176 (-)	765	WP_088133171.1	phage tail protein I	-
BSQ33_RS02295 (BSQ33_02315)	-	525136..526137 (-)	1002	WP_021021777.1	baseplate J/gp47 family protein	-
BSQ33_RS02300 (BSQ33_02320)	-	526109..526468 (-)	360	WP_021021776.1	phage baseplate protein	-
BSQ33_RS02305 (BSQ33_02325)	-	526468..526680 (-)	213	WP_088133172.1	hypothetical protein	-
BSQ33_RS02310 (BSQ33_02330)	-	526682..527299 (-)	618	WP_021021774.1	phage baseplate assembly protein V	-
BSQ33_RS02315 (BSQ33_02335)	-	527283..527840 (-)	558	WP_088133173.1	hypothetical protein	-
BSQ33_RS02330 (BSQ33_02350)	-	529051..529647 (-)	597	WP_088133176.1	hypothetical protein	-
BSQ33_RS02335 (BSQ33_02355)	-	529857..530603 (+)	747	WP_088133177.1	S24 family peptidase	-
BSQ33_RS02340 (BSQ33_02360)	sbcB	530853..532277 (+)	1425	WP_021021769.1	exodeoxyribonuclease I	Machinery gene

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 55040.45 Da
• Isoelectric Point: 5.9335

>NTDB_id=210766 BSQ33_RS02340 WP_021021769.1 530853..532277(+) (sbcB) [Vibrio gazogenes strain ATCC 43942]
MKNNAQPTFFFFDYETWGVHPAKDRPCQFAGVRTDMDFNIIGEPLVIFCQLPVDYLPTPEAALITGITPQQANTKGLSEP
EFIQRIHQELSHPNTTCLGYNNIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVARACHALRPEGVVWPENEDGNT
SFKLEHLSVANGIEHSNAHDAMADVYATIELAKVIKNAQPKLFDYFYSMRHKRKLNALIDIVSMTPLMHVSGMLGSHCQY
TSWVVPLAWHPHNKNAVIMVDLAKDPQPLFDLNADEIRERLYTKRDDLQEDELPIPVKLVHLNKCPILAPAKTLTAENAR
VIGIDRDKCLHHLSLMKQAQDIREKLVQVFSEERDYPTDTDVDTMLYQDFFNPADKAAMEIIRQTSPEALQDLSISFQDA
RIKPLLFRYRARNYPETLTLHEQKQWQSHCQDYFSQHMDDYILRLENLAHEHEHDPHKMQILKSIYQYVLNLTS

Nucleotide

• Length: 1425 bp

>NTDB_id=210766 BSQ33_RS02340 WP_021021769.1 530853..532277(+) (sbcB) [Vibrio gazogenes strain ATCC 43942]
ATGAAAAACAACGCACAACCAACATTCTTCTTCTTTGACTATGAAACCTGGGGAGTCCATCCCGCGAAAGATCGTCCCTG
TCAGTTTGCCGGGGTCAGAACAGATATGGACTTCAACATCATTGGCGAGCCGCTGGTCATCTTCTGTCAACTGCCGGTCG
ATTATCTGCCGACACCGGAAGCCGCACTCATCACTGGTATTACGCCACAGCAAGCGAATACCAAAGGTCTGTCAGAGCCC
GAGTTTATTCAGCGTATCCATCAAGAATTGTCTCATCCCAATACCACCTGTCTGGGCTATAACAATATCCGTTTTGACGA
TGAAGTAACCCGTTATACCTGTTATCGTAATTTTCTTGATCCTTATGCATGGAGCTGGCAAAACGGCAATTCGCGTTGGG
ATCTGCTAGACGTCGCTCGCGCCTGTCATGCATTACGCCCGGAAGGGGTTGTGTGGCCTGAAAATGAAGATGGCAATACT
AGCTTTAAACTCGAACATCTTTCCGTTGCAAATGGTATCGAGCATAGTAATGCCCATGATGCGATGGCCGACGTGTATGC
AACCATCGAATTGGCAAAAGTCATCAAGAATGCGCAACCGAAATTATTCGATTATTTCTATTCCATGCGCCATAAACGCA
AACTGAATGCTTTAATCGATATTGTCAGTATGACGCCCTTAATGCATGTGTCCGGTATGCTCGGCAGCCACTGCCAATAT
ACCAGTTGGGTTGTGCCGCTTGCCTGGCATCCGCATAACAAAAATGCAGTGATCATGGTTGATTTGGCGAAAGATCCTCA
GCCTCTCTTTGATCTCAATGCTGACGAAATTCGGGAGCGGCTCTACACAAAACGTGATGATTTACAAGAAGATGAGTTAC
CGATTCCGGTGAAGCTGGTTCATCTCAATAAGTGCCCGATCCTCGCTCCTGCCAAGACGCTCACAGCAGAAAATGCGCGT
GTGATTGGCATCGATAGAGACAAATGTTTACATCATTTATCTCTCATGAAGCAAGCTCAGGATATCAGAGAAAAACTGGT
TCAAGTATTTAGTGAAGAGAGAGACTATCCAACGGATACTGACGTCGATACGATGTTATACCAAGACTTTTTCAACCCGG
CTGACAAGGCTGCGATGGAGATTATCCGCCAAACATCGCCCGAAGCCTTACAAGACTTATCAATCTCTTTCCAAGACGCA
CGGATTAAGCCCTTATTATTCCGTTATCGAGCCAGAAACTATCCTGAAACACTCACCTTGCATGAACAAAAACAGTGGCA
ATCACACTGTCAGGACTACTTCTCCCAACATATGGATGATTATATTCTTCGTCTGGAAAATCTGGCTCATGAACATGAGC
ACGATCCTCATAAGATGCAGATCCTGAAATCAATCTACCAATATGTGCTTAACCTGACATCATAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-191)

3D structure

• AlphaFold DB: A0A1Z2SBX8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	73.784	99.789	0.736