Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR534_RS16245 Genome accession   NZ_CP024127
Coordinates   3003527..3004003 (-) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2998527..3009003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR534_RS16205 (CR534_16150) ghrA 2999252..3000190 (-) 939 WP_024238706.1 glyoxylate/hydroxypyruvate reductase GhrA -
  CR534_RS16215 (CR534_16160) - 3000661..3001503 (-) 843 WP_001280481.1 DUF4942 domain-containing protein -
  CR534_RS16220 (CR534_16165) - 3001588..3001785 (-) 198 WP_000839282.1 DUF957 domain-containing protein -
  CR534_RS16225 (CR534_16170) - 3001797..3002288 (-) 492 WP_000976857.1 DUF5983 family protein -
  CR534_RS16230 (CR534_16175) - 3002285..3002659 (-) 375 WP_000854914.1 TA system toxin CbtA family protein -
  CR534_RS16235 (CR534_16180) - 3002706..3003080 (-) 375 WP_001280953.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CR534_RS16240 (CR534_16185) - 3003243..3003464 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CR534_RS16245 (CR534_16190) radC 3003527..3004003 (-) 477 WP_001186726.1 RadC family protein Machinery gene
  CR534_RS16250 (CR534_16195) - 3004019..3004504 (-) 486 WP_000214398.1 antirestriction protein -
  CR534_RS16255 (CR534_16200) - 3004595..3005413 (-) 819 WP_001234682.1 DUF932 domain-containing protein -
  CR534_RS16270 (CR534_16215) - 3005753..3006823 (-) 1071 WP_000102669.1 patatin-like phospholipase family protein -
  CR534_RS16275 (CR534_16220) - 3006820..3007725 (-) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=210746 CR534_RS16245 WP_001186726.1 3003527..3004003(-) (radC) [Escherichia coli strain 14EC001]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210746 CR534_RS16245 WP_001186726.1 3003527..3004003(-) (radC) [Escherichia coli strain 14EC001]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392