Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR534_RS09810 Genome accession   NZ_CP024127
Coordinates   1870764..1871240 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865764..1876240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR534_RS09765 (CR534_09700) sbmC 1866264..1866737 (+) 474 Protein_1792 DNA gyrase inhibitor SbmC -
  CR534_RS09770 (CR534_09705) yeeA 1866935..1867993 (+) 1059 WP_001200910.1 FUSC family protein -
  CR534_RS09775 (CR534_09710) tmaR 1868165..1868494 (+) 330 WP_000450409.1 DUF496 family protein -
  CR534_RS09780 (CR534_09715) - 1868595..1868777 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CR534_RS09785 (CR534_09720) - 1868849..1868977 (+) 129 Protein_1796 transposase domain-containing protein -
  CR534_RS29260 - 1869266..1869346 (-) 81 Protein_1797 hypothetical protein -
  CR534_RS09790 (CR534_09725) yeeW 1869392..1869571 (-) 180 WP_053902470.1 DUF5983 family protein -
  CR534_RS09795 (CR534_09730) cbtA 1869568..1869942 (-) 375 WP_032163901.1 TA system toxin CbtA family protein -
  CR534_RS09800 (CR534_09735) cbeA 1870032..1870400 (-) 369 WP_040089920.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CR534_RS09805 (CR534_09740) yeeT 1870474..1870695 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CR534_RS09810 (CR534_09745) radC 1870764..1871240 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  CR534_RS09815 (CR534_09750) - 1871256..1871741 (-) 486 WP_097514179.1 antirestriction protein -
  CR534_RS09820 (CR534_09755) - 1871796..1872614 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  CR534_RS09830 (CR534_09765) - 1872714..1872947 (-) 234 WP_001119729.1 DUF905 family protein -
  CR534_RS09835 (CR534_09770) - 1873026..1873481 (-) 456 WP_000581504.1 IrmA family protein -
  CR534_RS09840 (CR534_09775) - 1873557..1876073 (-) 2517 WP_101981532.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=210734 CR534_RS09810 WP_001186725.1 1870764..1871240(-) (radC) [Escherichia coli strain 14EC001]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210734 CR534_RS09810 WP_001186725.1 1870764..1871240(-) (radC) [Escherichia coli strain 14EC001]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399