Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CR534_RS09755 Genome accession   NZ_CP024127
Coordinates   1863343..1864770 (-) Length   475 a.a.
NCBI ID   WP_072164953.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC001     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1858343..1869770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR534_RS09725 (CR534_09660) yeeZ 1858398..1859222 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  CR534_RS09730 (CR534_09665) yeeY 1859268..1860197 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CR534_RS09735 (CR534_09670) yoeI 1860412..1860474 (+) 63 WP_010723108.1 membrane protein YoeI -
  CR534_RS09740 (CR534_09675) plaP 1860464..1861822 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CR534_RS09745 (CR534_09680) tsuA 1862001..1863059 (+) 1059 WP_000492315.1 thiosulfate utilization transporter TsuA/YeeE -
  CR534_RS09750 (CR534_09685) tsuB 1863073..1863300 (+) 228 WP_000985280.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CR534_RS09755 (CR534_09690) sbcB 1863343..1864770 (-) 1428 WP_072164953.1 exodeoxyribonuclease I Machinery gene
  CR534_RS09760 (CR534_09695) dacD 1864979..1866145 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CR534_RS09765 (CR534_09700) sbmC 1866264..1866737 (+) 474 Protein_1792 DNA gyrase inhibitor SbmC -
  CR534_RS09770 (CR534_09705) yeeA 1866935..1867993 (+) 1059 WP_001200910.1 FUSC family protein -
  CR534_RS09775 (CR534_09710) tmaR 1868165..1868494 (+) 330 WP_000450409.1 DUF496 family protein -
  CR534_RS09780 (CR534_09715) - 1868595..1868777 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CR534_RS09785 (CR534_09720) - 1868849..1868977 (+) 129 Protein_1796 transposase domain-containing protein -
  CR534_RS29260 - 1869266..1869346 (-) 81 Protein_1797 hypothetical protein -
  CR534_RS09790 (CR534_09725) yeeW 1869392..1869571 (-) 180 WP_053902470.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54473.79 Da        Isoelectric Point: 5.4720

>NTDB_id=210733 CR534_RS09755 WP_072164953.1 1863343..1864770(-) (sbcB) [Escherichia coli strain 14EC001]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAIPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDSLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=210733 CR534_RS09755 WP_072164953.1 1863343..1864770(-) (sbcB) [Escherichia coli strain 14EC001]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACATTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGTTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCATTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAGCCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGTTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579