Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CR534_RS00480 Genome accession   NZ_CP024127
Coordinates   80851..81327 (-) Length   158 a.a.
NCBI ID   WP_004025728.1    Uniprot ID   -
Organism   Escherichia coli strain 14EC001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 75851..86327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR534_RS00425 (CR534_00420) escF 75882..76103 (+) 222 WP_001053840.1 type III secretion system LEE needle filament protein EscF -
  CR534_RS00430 (CR534_00425) escG 76109..76387 (+) 279 WP_000245815.1 type III secretion system LEE needle protein cochaperone EscG -
  CR534_RS00435 (CR534_00430) espF 76472..77224 (+) 753 WP_101981451.1 type III secretion system LEE effector EspF -
  CR534_RS00440 (CR534_00435) - 77507..77814 (-) 308 Protein_85 IS3 family transposase -
  CR534_RS00450 (CR534_00445) - 78282..79124 (-) 843 WP_001696593.1 DUF4942 domain-containing protein -
  CR534_RS00455 (CR534_00450) - 79209..79406 (-) 198 WP_086795284.1 DUF957 domain-containing protein -
  CR534_RS00460 - 79482..79631 (-) 150 Protein_88 DUF5983 family protein -
  CR534_RS00465 (CR534_00455) cbtA 79628..80005 (-) 378 WP_000854821.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CR534_RS00470 (CR534_00460) - 80095..80463 (-) 369 WP_101981452.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CR534_RS00475 (CR534_00465) - 80543..80764 (-) 222 Protein_91 DUF987 domain-containing protein -
  CR534_RS00480 (CR534_00470) radC 80851..81327 (-) 477 WP_004025728.1 RadC family protein Machinery gene
  CR534_RS29200 - 81343..81516 (-) 174 Protein_93 antirestriction protein -
  CR534_RS29205 - 81502..81714 (-) 213 Protein_94 IS66 family transposase -
  CR534_RS00490 (CR534_00480) tnpB 81745..82095 (-) 351 WP_000624718.1 IS66 family insertion sequence element accessory protein TnpB -
  CR534_RS00495 (CR534_00485) - 82092..82517 (-) 426 WP_000422741.1 transposase -
  CR534_RS29595 (CR534_00490) - 82603..83724 (+) 1122 Protein_97 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17640.25 Da        Isoelectric Point: 6.9859

>NTDB_id=210702 CR534_RS00480 WP_004025728.1 80851..81327(-) (radC) [Escherichia coli strain 14EC001]
MQQLSFLPGEMTPGERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210702 CR534_RS00480 WP_004025728.1 80851..81327(-) (radC) [Escherichia coli strain 14EC001]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACACCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACTGGCACC
ATCAACCGCACAGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACCCCCAGCAAGGCAGACCGCCTTATCACTGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392