Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   CR542_RS10990 Genome accession   NZ_CP024126
Coordinates   2144663..2145112 (+) Length   149 a.a.
NCBI ID   WP_004298348.1    Uniprot ID   -
Organism   Streptococcus suis strain HA0609     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139663..2150112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR542_RS10965 (CR542_10925) - 2140089..2141216 (+) 1128 WP_013730633.1 N-acetyldiaminopimelate deacetylase -
  CR542_RS10970 (CR542_10930) - 2141258..2141800 (+) 543 WP_004298341.1 5-formyltetrahydrofolate cyclo-ligase -
  CR542_RS10975 (CR542_10935) - 2141784..2142461 (+) 678 WP_004298343.1 rhomboid family intramembrane serine protease -
  CR542_RS10980 (CR542_10940) galU 2142480..2143379 (-) 900 WP_004298345.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  CR542_RS10985 (CR542_10945) - 2143425..2144441 (-) 1017 WP_004298347.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  CR542_RS10990 (CR542_10950) rcrR 2144663..2145112 (+) 450 WP_004298348.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  CR542_RS10995 (CR542_10955) - 2145105..2146811 (+) 1707 WP_004298350.1 ABC transporter ATP-binding protein -
  CR542_RS11000 (CR542_10960) - 2146812..2148596 (+) 1785 WP_004298352.1 ABC transporter ATP-binding protein -
  CR542_RS11005 (CR542_10965) - 2149377..2149808 (-) 432 WP_024417149.1 DUF1492 domain-containing protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 17631.12 Da        Isoelectric Point: 7.5575

>NTDB_id=210697 CR542_RS10990 WP_004298348.1 2144663..2145112(+) (rcrR) [Streptococcus suis strain HA0609]
MGHTIADFRNLLNQIEQISETIAKEYDVEHLAGPQGWALRFIAERSEVETFVKDIEAELRISKSVASNLVKRMEKNDFIR
VLPSQFDRRYKQLVLTEKGRSKICHLKSFHEEMHHSLFRGIQKEEFDLIRQVADQLKDNIQHYKEKNHV

Nucleotide


Download         Length: 450 bp        

>NTDB_id=210697 CR542_RS10990 WP_004298348.1 2144663..2145112(+) (rcrR) [Streptococcus suis strain HA0609]
ATGGGACATACTATTGCAGATTTTCGGAATCTATTAAATCAGATTGAACAAATCAGTGAAACCATTGCAAAGGAATATGA
TGTGGAGCACCTAGCTGGACCACAGGGATGGGCTCTGCGTTTCATAGCAGAACGGTCTGAAGTTGAAACCTTTGTCAAAG
ACATTGAAGCGGAGTTGAGGATTTCCAAATCCGTTGCCAGCAATCTAGTTAAGCGAATGGAGAAAAATGACTTTATTCGG
GTTTTACCTTCTCAGTTTGACAGACGCTATAAGCAGTTGGTCTTGACAGAGAAAGGTCGGAGCAAGATTTGTCACCTAAA
ATCCTTCCATGAGGAGATGCACCATTCTCTCTTTCGAGGTATTCAAAAGGAAGAATTTGATTTGATCAGACAGGTAGCCG
ATCAATTAAAAGATAATATTCAACACTATAAGGAGAAGAATCATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

43.972

94.631

0.416