Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPYLPMSS1_RS06755 Genome accession   NZ_CP018823
Coordinates   1371769..1373082 (-) Length   437 a.a.
NCBI ID   WP_162272614.1    Uniprot ID   -
Organism   Helicobacter pylori PMSS1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1366769..1378082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLPMSS1_RS06725 (HPYLPMSS1_01302) nadC 1367238..1368059 (-) 822 WP_077232448.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPYLPMSS1_RS06730 (HPYLPMSS1_01303) nadA 1368059..1369063 (-) 1005 WP_077232449.1 quinolinate synthase NadA -
  HPYLPMSS1_RS06735 (HPYLPMSS1_01304) - 1369053..1369856 (-) 804 WP_077232450.1 phosphatidylserine decarboxylase -
  HPYLPMSS1_RS06740 (HPYLPMSS1_01305) - 1369850..1370356 (-) 507 WP_000953098.1 DUF6115 domain-containing protein -
  HPYLPMSS1_RS06745 (HPYLPMSS1_01306) - 1370369..1370863 (-) 495 WP_162272613.1 hypothetical protein -
  HPYLPMSS1_RS06750 (HPYLPMSS1_01307) mqnP 1370856..1371698 (-) 843 WP_235004091.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPYLPMSS1_RS06755 (HPYLPMSS1_01308) comEC/comE3 1371769..1373082 (-) 1314 WP_162272614.1 ComEC/Rec2 family competence protein Machinery gene
  HPYLPMSS1_RS06760 (HPYLPMSS1_01309) - 1373079..1374545 (-) 1467 WP_000349727.1 replicative DNA helicase -
  HPYLPMSS1_RS06765 (HPYLPMSS1_01310) - 1374556..1375956 (-) 1401 WP_077232453.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPYLPMSS1_RS06770 (HPYLPMSS1_01311) crdS 1375959..1377161 (-) 1203 WP_077232454.1 copper-sensing histidine kinase CrdS -
  HPYLPMSS1_RS06775 (HPYLPMSS1_01312) crdR 1377127..1377768 (-) 642 WP_077232455.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50207.36 Da        Isoelectric Point: 9.9068

>NTDB_id=210683 HPYLPMSS1_RS06755 WP_162272614.1 1371769..1373082(-) (comEC/comE3) [Helicobacter pylori PMSS1]
MKDKTFQGAFELLITPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFLKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAHFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDLKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLMRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHVVGLGSLLDRLLSMPLTIPTISVPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=210683 HPYLPMSS1_RS06755 WP_162272614.1 1371769..1373082(-) (comEC/comE3) [Helicobacter pylori PMSS1]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTATAACCCCTAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTTAAAACCTACAAGCCTGAACG
CTCAAATTCTATTACAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCATTTTTTTGGCAAAATCAAGCCTTGCTC
ATTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATCTTAAATCGCATG
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTGTTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTAAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTCTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTAATGCGATCGTTTCAAGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATTATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTTTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGTTGTGGGTTTGGGGTCTTTGTTGGATCGCC
TTTTAAGCATGCCTTTAACAATCCCTACGATTTCGGTTCCTTCACCCTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.881

100

0.959

Multiple sequence alignment