Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   HPYLPMSS1_RS01685 Genome accession   NZ_CP018823
Coordinates   337051..337455 (+) Length   134 a.a.
NCBI ID   WP_077231810.1    Uniprot ID   -
Organism   Helicobacter pylori PMSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 332051..342455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPYLPMSS1_RS01650 (HPYLPMSS1_00316) - 332229..333167 (-) 939 WP_077231806.1 tetraacyldisaccharide 4'-kinase -
  HPYLPMSS1_RS01655 (HPYLPMSS1_00317) - 333164..333946 (-) 783 WP_077231807.1 NAD+ synthase -
  HPYLPMSS1_RS01665 (HPYLPMSS1_00319) ilvC 334195..335187 (+) 993 WP_077231808.1 ketol-acid reductoisomerase -
  HPYLPMSS1_RS01670 (HPYLPMSS1_00320) minD 335211..336017 (+) 807 WP_001019051.1 septum site-determining protein MinD -
  HPYLPMSS1_RS01675 (HPYLPMSS1_00321) minE 336014..336247 (+) 234 WP_000051430.1 cell division topological specificity factor MinE -
  HPYLPMSS1_RS01680 (HPYLPMSS1_00322) dprA 336254..337054 (+) 801 WP_077231809.1 DNA-processing protein DprA Machinery gene
  HPYLPMSS1_RS01685 (HPYLPMSS1_00323) dprB 337051..337455 (+) 405 WP_077231810.1 Holliday junction resolvase RuvX Machinery gene
  HPYLPMSS1_RS01690 - 337581..338157 (+) 577 Protein_316 tetratricopeptide repeat protein -
  HPYLPMSS1_RS01695 (HPYLPMSS1_00326) - 338345..338683 (+) 339 WP_077231811.1 hypothetical protein -
  HPYLPMSS1_RS01700 (HPYLPMSS1_00327) - 338667..339227 (+) 561 WP_077231812.1 hypothetical protein -
  HPYLPMSS1_RS01705 (HPYLPMSS1_00328) - 339340..340221 (-) 882 WP_077231813.1 RluA family pseudouridine synthase -
  HPYLPMSS1_RS01710 (HPYLPMSS1_00329) recJ 340221..341771 (-) 1551 WP_077231814.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15198.71 Da        Isoelectric Point: 9.1627

>NTDB_id=210678 HPYLPMSS1_RS01685 WP_077231810.1 337051..337455(+) (dprB) [Helicobacter pylori PMSS1]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYDNLEHLGRKNKRIAIKDGRLDSLSACRILERYCQKVLKKG

Nucleotide


Download         Length: 405 bp        

>NTDB_id=210678 HPYLPMSS1_RS01685 WP_077231810.1 337051..337455(+) (dprB) [Helicobacter pylori PMSS1]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGATACGAACGCACGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAATTCTAGCATAGAAGCTTATGATAATTTAGAGCATTTGGGTAGGAAAAATAAGCGGAT
CGCTATCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGAAGGTTTTAAAAAAGG
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94

Multiple sequence alignment