Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   CR542_RS06560 Genome accession   NZ_CP024126
Coordinates   1269723..1270205 (+) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis strain HA0609     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264723..1275205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR542_RS06535 (CR542_06525) - 1265971..1267281 (-) 1311 WP_002938090.1 GntP family permease -
  CR542_RS06540 (CR542_06530) folK 1267332..1267820 (-) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  CR542_RS06545 (CR542_06535) folB 1267817..1268179 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  CR542_RS06550 (CR542_06540) folP 1268172..1268984 (-) 813 WP_024409175.1 dihydropteroate synthase -
  CR542_RS06555 (CR542_06545) folE 1268993..1269556 (-) 564 WP_053338601.1 GTP cyclohydrolase I FolE -
  CR542_RS06560 (CR542_06550) mutX 1269723..1270205 (+) 483 WP_002938080.1 NUDIX hydrolase Machinery gene
  CR542_RS06565 (CR542_06555) - 1270254..1270931 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  CR542_RS06570 (CR542_06560) - 1270918..1271661 (-) 744 WP_053338602.1 polyphosphate polymerase domain-containing protein -
  CR542_RS06575 (CR542_06565) - 1271854..1272156 (+) 303 WP_002938072.1 hypothetical protein -
  CR542_RS06580 (CR542_06570) - 1272177..1272443 (-) 267 WP_002938070.1 DUF2087 domain-containing protein -
  CR542_RS06585 (CR542_06575) pheT 1272498..1274897 (-) 2400 WP_002938067.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=210662 CR542_RS06560 WP_002938080.1 1269723..1270205(+) (mutX) [Streptococcus suis strain HA0609]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=210662 CR542_RS06560 WP_002938080.1 1269723..1270205(+) (mutX) [Streptococcus suis strain HA0609]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775

Multiple sequence alignment