Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BTR42_RS07050 Genome accession   NZ_CP018822
Coordinates   1394184..1395998 (-) Length   604 a.a.
NCBI ID   WP_009854393.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1390734..1412704 1394184..1395998 within 0


Gene organization within MGE regions


Location: 1390734..1412704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS07035 (BTR42_06730) - 1390734..1391186 (-) 453 WP_009854390.1 MarR family winged helix-turn-helix transcriptional regulator -
  BTR42_RS07040 (BTR42_06735) - 1391176..1392153 (-) 978 WP_009854391.1 zinc-binding dehydrogenase -
  BTR42_RS07045 (BTR42_06740) rcrQ 1392422..1394194 (-) 1773 WP_009854392.1 ABC transporter ATP-binding protein Regulator
  BTR42_RS07050 (BTR42_06745) rcrP 1394184..1395998 (-) 1815 WP_009854393.1 ABC transporter ATP-binding protein Regulator
  BTR42_RS07055 (BTR42_06750) rcrR 1396002..1396442 (-) 441 WP_012962070.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  BTR42_RS07060 (BTR42_06755) - 1396617..1397027 (-) 411 WP_009854395.1 peptide deformylase -
  BTR42_RS07065 (BTR42_06760) - 1397024..1397533 (-) 510 WP_077496988.1 GNAT family N-acetyltransferase -
  BTR42_RS07070 (BTR42_06765) gdhA 1397800..1399149 (-) 1350 WP_009854398.1 NADP-specific glutamate dehydrogenase -
  BTR42_RS07075 (BTR42_06770) - 1399396..1399893 (+) 498 WP_009854399.1 DUF308 domain-containing protein -
  BTR42_RS12750 (BTR42_06775) queF 1399950..1400441 (-) 492 WP_009854400.1 preQ(1) synthase -
  BTR42_RS12755 (BTR42_06780) queE 1400454..1401167 (-) 714 WP_009854401.1 7-carboxy-7-deazaguanine synthase QueE -
  BTR42_RS07085 (BTR42_06785) queD 1401160..1401606 (-) 447 WP_009854402.1 6-carboxytetrahydropterin synthase QueD -
  BTR42_RS07090 (BTR42_06790) queC 1401612..1402259 (-) 648 WP_043878574.1 7-cyano-7-deazaguanine synthase QueC -
  BTR42_RS07095 (BTR42_06795) - 1402500..1404269 (-) 1770 WP_009854404.1 ABC transporter ATP-binding protein -
  BTR42_RS07100 (BTR42_06800) - 1404272..1406011 (-) 1740 WP_043878575.1 ABC transporter ATP-binding protein -
  BTR42_RS07105 (BTR42_06805) - 1406089..1407960 (-) 1872 WP_009854406.1 ABC-F family ATP-binding cassette domain-containing protein -
  BTR42_RS07110 (BTR42_06810) - 1407957..1409162 (-) 1206 WP_009854407.1 CCA tRNA nucleotidyltransferase -
  BTR42_RS07115 (BTR42_06815) dapB 1409159..1409926 (-) 768 WP_009854408.1 4-hydroxy-tetrahydrodipicolinate reductase -
  BTR42_RS07120 (BTR42_06820) - 1409946..1410794 (-) 849 WP_009854409.1 DegV family protein -
  BTR42_RS07125 (BTR42_06825) - 1410794..1411174 (-) 381 WP_009854410.1 DUF1149 family protein -
  BTR42_RS07130 (BTR42_06830) - 1411303..1412076 (-) 774 WP_009854411.1 TMEM175 family protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67036.99 Da        Isoelectric Point: 5.9917

>NTDB_id=210638 BTR42_RS07050 WP_009854393.1 1394184..1395998(-) (rcrP) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MLKILKRLTAKEVTMLIFAVLFVCLNVYLELKIPDYMSDITTLLSTEGTKVKDIFAWNFDAPGMRMVLLSLGSFAASVVV
GFLAARIAASFSTRLRDDIFHSVLNFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGIQVITKGPIMAIWAITKIADKNH
EWLLVLIVAVAVMFLMIIFLLMMVMPKQRMIQTLTDKLNSITRESLTGIRVVRAYNAEDYQDAKFAQANDNVTNLNLFIG
RSMALLSPVMTGISSGMTLAIYWIGAHLIENIAIPTDPTKIAGAMQDKVDLFSDMVVYSSYAMQVVMGFMMMIVVFFILP
RAVVAAGRINEVLETKSSIEYPETNQAKPTEKGSVEFDNVSFRYSKNSEAVLEHVSFKAKAGDTVAFIGSTGSGKSTLVN
LIPRFYDATEGTIKVDGIDVRQYDHDTLHKIVGYIPQKAVLFSGDIASNMDMGESNSSPLDDDKMWEALDLAQGKTFVEM
KDGKLKAPVAQGGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRSQLKERTADMTKLIVAQRISTIMDA
DQILVLDEGKVVGQGTHEELLANNDVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=210638 BTR42_RS07050 WP_009854393.1 1394184..1395998(-) (rcrP) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGTTAAAAATTTTGAAACGCTTAACAGCAAAAGAAGTTACAATGCTTATTTTTGCTGTATTATTTGTGTGTTTGAATGT
TTATCTTGAGTTAAAAATTCCAGATTATATGTCGGATATCACGACCTTGCTATCAACAGAAGGGACAAAAGTAAAAGATA
TTTTTGCTTGGAACTTTGATGCACCAGGTATGCGTATGGTCTTGCTTTCTTTGGGAAGCTTTGCGGCATCTGTCGTTGTC
GGTTTCCTAGCTGCTCGTATTGCGGCAAGTTTTAGTACACGCCTACGTGATGATATTTTCCATAGTGTCTTGAATTTTTC
AGATGCTGAAATCAAGAAATTTTCAATTCCTAGTCTTTTGACACGTACAACCAATGATATTACACAAATTCAATTGGTTT
TCACAATGGGAATCCAAGTCATTACTAAAGGACCTATCATGGCAATTTGGGCAATAACCAAGATTGCTGATAAAAATCAT
GAATGGTTATTGGTTCTTATCGTCGCAGTTGCGGTTATGTTCTTGATGATCATTTTCTTGTTGATGATGGTGATGCCTAA
ACAACGCATGATTCAAACATTAACCGATAAATTGAACAGTATTACGCGAGAATCATTGACAGGTATCCGTGTGGTGCGTG
CATACAATGCCGAAGATTATCAAGATGCCAAATTTGCACAAGCCAATGATAATGTTACCAATCTTAACCTCTTTATTGGA
CGTTCAATGGCGTTGTTATCTCCAGTAATGACAGGAATTTCAAGCGGAATGACACTTGCTATTTACTGGATTGGTGCGCA
TTTGATTGAAAATATTGCTATTCCGACAGACCCAACGAAAATTGCTGGCGCTATGCAAGATAAAGTTGATTTGTTTTCAG
ATATGGTTGTTTATTCATCATATGCCATGCAAGTTGTTATGGGATTCATGATGATGATTGTCGTATTCTTCATTTTACCT
CGTGCCGTTGTTGCTGCTGGGCGTATTAATGAAGTTCTTGAAACAAAATCTTCAATTGAATATCCAGAAACAAATCAAGC
TAAACCAACTGAAAAAGGTTCTGTTGAATTTGACAATGTTTCATTCCGTTACAGCAAAAATTCAGAAGCTGTTTTGGAAC
ACGTTTCCTTTAAAGCGAAAGCTGGAGACACGGTTGCCTTTATTGGTTCAACTGGTTCTGGTAAATCAACTTTGGTGAAC
TTGATTCCACGTTTTTATGACGCGACAGAAGGAACGATTAAAGTCGATGGCATTGATGTTCGTCAATATGACCACGATAC
GCTTCATAAGATTGTTGGTTATATTCCGCAAAAAGCAGTGCTTTTCAGTGGGGATATCGCTTCAAATATGGATATGGGAG
AAAGCAATAGCTCGCCGCTTGATGATGACAAGATGTGGGAAGCTCTTGATTTAGCTCAAGGTAAGACATTCGTTGAAATG
AAAGACGGTAAGTTAAAAGCACCTGTTGCTCAAGGTGGTCAAAACTTCTCAGGTGGTCAAAAACAACGTTTGGCAATTGC
GCGTGCTCTTGCTCGTAAGCCTGAAATTATCATCTTTGATGATTCGTTCTCAGCACTTGACTACAAGACTGACCGAATCC
TCCGTTCACAGTTGAAAGAACGTACAGCTGATATGACGAAATTAATCGTGGCACAACGTATCTCAACGATTATGGACGCT
GACCAAATTTTGGTCTTGGATGAAGGTAAAGTTGTTGGTCAAGGTACGCACGAAGAATTGCTTGCAAACAACGATGTTTA
TCGTGAAATTGCTTACTCACAACTATCTAAGGAGGAATTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(372-522)

ABC transporter transmembrane region (ABC_membrane)

(17-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

66.942

100

0.671

Multiple sequence alignment