Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GS_RS05645 Genome accession   NC_002939
Coordinates   1217703..1218755 (+) Length   350 a.a.
NCBI ID   WP_010941793.1    Uniprot ID   Q74E32
Organism   Geobacter sulfurreducens PCA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1212703..1223755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS_RS05635 (GSU1130) smc 1213795..1217322 (+) 3528 WP_010941791.1 chromosome segregation protein SMC -
  GS_RS05640 (GSU1131) - 1217342..1217701 (+) 360 WP_010941792.1 roadblock/LC7 domain-containing protein -
  GS_RS05645 (GSU1132) pilA 1217703..1218755 (+) 1053 WP_010941793.1 signal recognition particle-docking protein FtsY Machinery gene
  GS_RS05650 (GSU1133) - 1218817..1218993 (+) 177 WP_010941794.1 cell division protein ZapB -
  GS_RS05655 (GSU1134) - 1218993..1219280 (+) 288 WP_010941795.1 cell division protein ZapA -
  GS_RS05660 (GSU1136) - 1219662..1220225 (+) 564 WP_010941797.1 5-formyltetrahydrofolate cyclo-ligase -
  GS_RS05665 (GSU1137) rny 1220253..1221815 (+) 1563 WP_010941798.1 ribonuclease Y -
  GS_RS05670 (GSU1138) - 1221805..1222593 (+) 789 WP_010941799.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37933.34 Da        Isoelectric Point: 5.3719

>NTDB_id=21054 GS_RS05645 WP_010941793.1 1217703..1218755(+) (pilA) [Geobacter sulfurreducens PCA]
MAEERKGFFKGLWGKVTGGDRDQEEAVNETTSAVADVAAPPEQEDRRPGLFERLKQGLSKTRDSLVGRIDRLVLGKKEID
ADTLEELEEILITADLGVQTTVELIRGLEQRLSRNELKDGEALREALKEDIHGRLARDAHQLDVTGASPFVIMVIGVNGV
GKTTTIGKLAARFTAQGKKVILAAGDTFRAAAAEQLQIWGERTGVDVIRHKEGADPSAVVFDSIKAAVARGADILIVDTA
GRLHTKVNLMEELKKVRRIMSREIPGAPHETLLVLDAATGQNALSQAKLFKEAAQVTGIALTKLDGTAKGGIVVAICNEF
RIPVRYIGVGEGIDDLRDFDPSQFVEALFQ

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=21054 GS_RS05645 WP_010941793.1 1217703..1218755(+) (pilA) [Geobacter sulfurreducens PCA]
ATGGCGGAAGAACGGAAGGGCTTTTTCAAGGGACTTTGGGGTAAGGTTACCGGCGGCGATCGTGACCAGGAAGAGGCAGT
CAATGAAACGACGTCCGCCGTTGCGGATGTCGCTGCACCGCCGGAGCAGGAAGACCGGCGCCCCGGATTGTTCGAGCGGC
TCAAACAGGGGCTGAGCAAGACCCGCGATAGCCTGGTGGGACGCATCGATCGTCTCGTGCTCGGCAAGAAGGAGATTGAC
GCCGACACCCTTGAGGAGCTGGAGGAGATACTCATTACCGCCGATCTGGGCGTCCAGACCACCGTCGAGTTGATCAGGGG
ATTGGAGCAGCGCCTCTCCCGCAACGAGCTCAAGGACGGCGAGGCCCTCCGGGAGGCGCTCAAGGAGGATATCCACGGTC
GCCTTGCCCGTGACGCCCATCAACTGGACGTAACAGGTGCCTCTCCCTTCGTCATCATGGTCATCGGCGTCAACGGTGTC
GGCAAGACTACTACCATTGGCAAGCTCGCGGCCCGGTTTACCGCCCAGGGGAAAAAAGTGATTCTGGCCGCCGGCGACAC
CTTCCGCGCTGCTGCCGCCGAGCAACTCCAGATATGGGGCGAGCGTACCGGCGTCGACGTGATCCGCCACAAGGAAGGGG
CGGATCCGTCTGCCGTTGTGTTCGACAGCATCAAGGCGGCCGTGGCTCGTGGCGCGGACATCCTCATCGTCGACACCGCC
GGCCGTCTCCATACCAAGGTAAACCTCATGGAGGAACTCAAAAAAGTCCGCCGCATCATGTCGCGGGAGATCCCCGGGGC
TCCCCACGAGACGTTGCTGGTTCTTGACGCGGCAACGGGACAGAATGCCCTCTCGCAGGCGAAACTCTTCAAGGAGGCAG
CCCAGGTTACCGGCATCGCCCTGACAAAGCTTGACGGTACGGCAAAGGGAGGAATTGTGGTTGCAATCTGCAATGAGTTC
AGGATTCCCGTCCGTTACATCGGCGTCGGCGAGGGCATCGACGACCTGCGGGATTTCGATCCCTCCCAATTTGTGGAAGC
CCTCTTTCAATAA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(149-349)

SRP54-type protein, helical bundle domain (SRP54_N)

(66-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q74E32

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.454

93.143

0.489

Multiple sequence alignment