Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   BTO02_RS02720 Genome accession   NZ_CP018811
Coordinates   590151..591668 (-) Length   505 a.a.
NCBI ID   WP_075155715.1    Uniprot ID   A0A1L6HSQ2
Organism   Paraburkholderia sp. SOS3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585151..596668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTO02_RS02695 (BTO02_02695) - 585984..586619 (-) 636 WP_075155710.1 LON peptidase substrate-binding domain-containing protein -
  BTO02_RS02700 (BTO02_02700) rapZ 586659..587552 (-) 894 WP_075155711.1 RNase adapter RapZ -
  BTO02_RS02705 (BTO02_02705) hprK 587639..588607 (-) 969 WP_075155712.1 HPr(Ser) kinase/phosphatase -
  BTO02_RS02710 (BTO02_02710) ptsN 588828..589343 (-) 516 WP_075155713.1 PTS IIA-like nitrogen regulatory protein PtsN -
  BTO02_RS02715 (BTO02_02715) raiA 589619..589978 (-) 360 WP_075155714.1 ribosome-associated translation inhibitor RaiA -
  BTO02_RS02720 (BTO02_02720) rpoN/rpoN1 590151..591668 (-) 1518 WP_075155715.1 RNA polymerase factor sigma-54 Machinery gene
  BTO02_RS02725 (BTO02_02725) lptB 591911..592693 (-) 783 WP_075155716.1 LPS export ABC transporter ATP-binding protein -
  BTO02_RS02730 (BTO02_02730) lptA 592828..593430 (-) 603 Protein_535 lipopolysaccharide transport periplasmic protein LptA -
  BTO02_RS02735 (BTO02_02735) lptC 593461..594048 (-) 588 WP_075155717.1 LPS export ABC transporter periplasmic protein LptC -
  BTO02_RS02740 (BTO02_02740) - 594062..594598 (-) 537 WP_075155718.1 HAD family hydrolase -
  BTO02_RS02745 (BTO02_02745) kdsD 594598..595581 (-) 984 WP_075155719.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55461.65 Da        Isoelectric Point: 4.8824

>NTDB_id=210534 BTO02_RS02720 WP_075155715.1 590151..591668(-) (rpoN/rpoN1) [Paraburkholderia sp. SOS3]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVSMAIAQNPLLETEDDWIASPLRVAADGSVIAQVPNASAPEPMA
SAPSSTSTSTSGESSENSEPQGVDEYNGLASDSNADANQWNLDDYGRSGNASDDDDLPPLQIHESATMLRDHLTAQLRVT
QASPRDRALITFLIESLDDDGYLTATLEEVLADLPEELEVDLDELNAALALLQSFDPAGVGARSASECLKLQLCRLEPSP
TRTLALEIVAHHLELLAARDFTRLRKHLKASDDDLRDAHTLIRSLEPFPGAAYGKAEADYVVPDIMVRKTAQGWLAELNP
EVVPKLRINHLYANILRNNRGDPGSGSLRQQLQEARWLIKNIQQRFETILRVAQAIVERQKNFFAHGEIAMRPLVLREIA
DTLGLHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDTKSPLSDSRIAELLAEQGF
VVARRTVAKYREALKIPAVNLRKSL

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=210534 BTO02_RS02720 WP_075155715.1 590151..591668(-) (rpoN/rpoN1) [Paraburkholderia sp. SOS3]
ATGAAAGCTAGCCTCCAACTTCGCCTGTCACAGCATCTTGCGCTGACACCCCAACTGCAGCAGTCCATCCGGCTGCTGCA
GTTGTCTACGCTTGAGCTGCAGCAGGAGGTGTCGATGGCGATCGCGCAGAATCCGTTGCTCGAAACCGAAGACGACTGGA
TCGCCAGCCCGCTGCGCGTCGCGGCCGACGGCTCGGTCATCGCGCAGGTGCCGAATGCCAGCGCGCCCGAGCCGATGGCA
AGCGCGCCATCGTCCACCAGCACTTCCACGTCTGGCGAAAGCTCGGAAAACAGCGAGCCGCAGGGCGTCGACGAATATAA
CGGTCTCGCGTCGGACAGCAATGCCGATGCGAACCAGTGGAATCTCGACGATTACGGCCGCTCGGGCAACGCGTCCGACG
ACGACGACCTGCCGCCGCTGCAAATCCACGAATCCGCGACCATGCTGCGCGATCATCTGACCGCGCAATTGCGTGTTACG
CAGGCCAGCCCGCGCGATCGCGCGCTCATCACGTTCCTGATCGAATCGCTCGACGACGACGGTTACCTGACCGCGACGCT
CGAAGAAGTGCTTGCGGACCTGCCCGAAGAACTCGAAGTCGATCTCGACGAACTGAATGCTGCGCTTGCGCTGCTGCAAA
GCTTCGACCCGGCCGGTGTCGGTGCACGTTCGGCATCGGAGTGTCTGAAGTTGCAGCTGTGCCGTCTCGAGCCATCGCCC
ACGCGCACGCTTGCACTGGAAATCGTCGCTCACCATCTGGAACTGCTTGCTGCGCGCGACTTCACGCGCCTGCGCAAACA
CCTGAAAGCAAGCGATGACGACCTACGCGACGCGCATACGCTGATCCGCTCGCTCGAGCCGTTCCCGGGCGCCGCATACG
GCAAGGCCGAAGCGGACTACGTGGTGCCGGACATCATGGTGCGCAAAACAGCACAGGGGTGGCTCGCCGAACTCAATCCG
GAAGTGGTGCCGAAGCTGCGCATCAACCATCTGTACGCGAATATTCTGCGCAACAATCGCGGCGATCCGGGCAGTGGATC
GCTGCGCCAACAACTACAGGAAGCACGCTGGCTCATCAAGAATATCCAGCAAAGATTCGAAACGATACTGCGCGTCGCGC
AGGCCATTGTCGAGCGTCAAAAGAATTTTTTTGCCCATGGTGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATTGCT
GATACGCTGGGTCTACACGAGTCGACGGTCTCGCGTGTGACGACCGGGAAGTACATGCTCACCCCGTTCGGGACGCTTGA
ATTTAAGTACTTCTTCGGATCGCACGTATCGACCGACACTGGGGGCGCGGCCTCTTCCACGGCCATTCGCGCCCTCATCA
AGCAACTGATAGGAGCAGAAGACACCAAATCTCCTCTTTCAGACAGCCGCATTGCCGAACTGCTGGCCGAACAAGGTTTC
GTGGTCGCACGGCGCACCGTAGCGAAATACCGCGAAGCGCTGAAGATCCCGGCAGTCAATCTGCGCAAGTCTCTGTAG

Domains

Predicted by InterProScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(142-332)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(348-503)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.723

100

0.677

Multiple sequence alignment