Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   BTV21_RS05435 Genome accession   NZ_CP018808
Coordinates   1245821..1248247 (-) Length   808 a.a.
NCBI ID   WP_075294360.1    Uniprot ID   A0A9Q6Z1W9
Organism   Histophilus somni strain USDA-ARS-USMARC-63374     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240821..1253247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV21_RS05425 (BTV21_05425) rlmKL 1241818..1243974 (-) 2157 WP_075294361.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -
  BTV21_RS05430 (BTV21_05430) msbA 1244021..1245769 (-) 1749 WP_041605303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BTV21_RS05435 (BTV21_05435) rec2 1245821..1248247 (-) 2427 WP_075294360.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BTV21_RS05440 (BTV21_05440) dksA 1248546..1248983 (+) 438 WP_012340641.1 RNA polymerase-binding protein DksA -
  BTV21_RS05445 (BTV21_05445) pcnB 1249285..1250658 (+) 1374 WP_232451468.1 polynucleotide adenylyltransferase PcnB -
  BTV21_RS05450 (BTV21_05450) folK 1250655..1251131 (+) 477 WP_012340643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  BTV21_RS05455 (BTV21_05455) nagA 1251229..1252377 (-) 1149 WP_012340644.1 N-acetylglucosamine-6-phosphate deacetylase -
  BTV21_RS05460 (BTV21_05460) nagB 1252390..1253196 (-) 807 WP_012340645.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 92375.80 Da        Isoelectric Point: 9.6461

>NTDB_id=210497 BTV21_RS05435 WP_075294360.1 1245821..1248247(-) (rec2) [Histophilus somni strain USDA-ARS-USMARC-63374]
MKFNLDHYLFVILASAMTLLISPRIFLLNWQWILILCLVLGLGYIGVKAVFFRCVLKLFFIFVLGLGFFHYQALNLLEQS
EHITRLPKKVQTNVKIAEIIQQKDYQAVIAEGKFTSSLPTQRIYLNWRTEQEVQVGEIWQVNMHIRPISSRLNIGGFDRQ
TWYLAKEITAYATVKSAVKIGEDFSWRATRLNQALQQTSNLVSQGLLLALGFGERAWLDKELWQLYQQTNTAHLIAISGL
HIGLAMFIGFTLGRAIQLLFPTRYIEPYFPLILGLFLAFCYAELAGFSIPTFRAIVALFIVCLCRICRVSYNVWQLFLRV
ICVLLILNPFMLLSASFWLSIGAVGCLIMWYQWIPLNLFLWKEKPLAQSSLKKVRYFIGLFHLQFGLLWFFTPIQLLIFN
GIALNGFWANLLLLPLFSFLLVPLILFAVLTEGALNSWNIANQLAIWINQLLKLLPNQWINISLAESYFISAILALLFTL
CCKWIIKCSTDDDLSLLRKVRKKSFYPIRLNFSDGFSHKKYQYGMVVSSAMFVIFLCLWFFSLYEQGRLKNTQWQFDTLD
VGQGLASLLVKNQHGILYDTGASWKNGSMAKIEIIPYLRRQGIILDKVILSHDDNDHAGGVKDIFQAYPNAEFISPSLKK
YENSPENRPHIACQKGKIWHWQGLYIEALSPSKIVMRANNPDSCVLIISDGQHKILLTGDADVATEYKILSDLGKIDVLQ
VGHHGSKTSTGEKLLQHIQPKIALISSGRWNPWGFPHQDVVKRLNAVESAVYNTAISGQIRLTFKGKDIQIQTARTEFSP
WYRGLIGL

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=210497 BTV21_RS05435 WP_075294360.1 1245821..1248247(-) (rec2) [Histophilus somni strain USDA-ARS-USMARC-63374]
ATGAAATTCAACCTTGATCATTACCTTTTTGTTATTTTAGCGAGTGCAATGACATTGCTAATTTCGCCTCGTATTTTTTT
ATTGAATTGGCAATGGATATTGATCTTATGTCTTGTTCTTGGGTTAGGATATATTGGTGTTAAAGCAGTATTTTTTCGCT
GTGTTCTAAAGCTATTTTTCATTTTTGTTCTTGGGTTGGGATTTTTTCATTATCAAGCATTAAACTTGTTGGAACAAAGT
GAGCATATTACCCGCTTACCTAAAAAAGTACAAACTAACGTTAAAATAGCTGAAATTATTCAGCAGAAAGACTATCAAGC
AGTGATCGCAGAAGGAAAATTCACCTCATCTTTGCCAACACAGCGAATTTATTTAAATTGGCGTACTGAGCAAGAAGTTC
AAGTTGGTGAAATTTGGCAAGTAAATATGCACATTCGTCCGATTTCTTCTCGATTAAATATAGGAGGATTTGATCGTCAA
ACCTGGTATTTAGCAAAAGAAATTACAGCTTATGCCACAGTAAAAAGTGCGGTGAAAATTGGTGAGGATTTTTCTTGGCG
AGCTACTCGACTGAATCAAGCTTTACAACAAACTTCCAATTTAGTTTCACAAGGTTTATTGCTTGCATTGGGTTTTGGTG
AAAGAGCATGGCTAGACAAGGAATTATGGCAACTCTATCAACAAACCAATACCGCACATTTAATTGCAATTTCAGGGTTG
CATATTGGGTTAGCTATGTTCATCGGTTTTACATTAGGGCGAGCTATTCAATTATTATTCCCTACTCGTTATATTGAACC
TTATTTTCCTTTAATATTAGGGCTTTTTTTAGCATTCTGTTATGCAGAATTGGCGGGATTTTCAATTCCTACTTTTCGTG
CGATTGTCGCTTTATTTATAGTTTGTTTATGTCGTATATGTCGAGTTTCCTATAATGTTTGGCAACTATTTTTGCGGGTT
ATTTGTGTTTTACTGATACTTAATCCATTTATGTTATTGTCAGCCAGTTTTTGGCTATCAATCGGAGCGGTAGGTTGTTT
GATCATGTGGTATCAATGGATACCGCTAAATTTATTTTTATGGAAAGAAAAGCCTTTGGCACAATCTTCCTTGAAAAAAG
TGCGGTATTTTATCGGTCTTTTTCATTTGCAATTTGGGCTTTTGTGGTTTTTTACACCTATCCAACTCTTAATTTTTAAC
GGTATTGCCTTAAATGGATTTTGGGCTAATTTATTATTGTTGCCTTTGTTCAGTTTTTTGTTAGTTCCACTTATTCTTTT
TGCTGTACTGACGGAAGGTGCGTTAAATAGTTGGAATATAGCTAATCAGCTTGCTATATGGATCAATCAATTGTTAAAGC
TGTTACCAAATCAGTGGATCAATATTTCTCTTGCAGAAAGCTATTTTATTTCAGCTATATTAGCTTTGCTCTTCACCTTA
TGCTGTAAATGGATTATTAAGTGTTCAACCGACGATGATTTATCTTTATTGAGAAAAGTTAGAAAAAAAAGTTTTTACCC
TATACGGTTGAATTTTTCGGACGGTTTTTCACATAAAAAATATCAATATGGTATGGTGGTCAGTTCAGCTATGTTTGTTA
TTTTTTTATGTCTGTGGTTTTTTTCGCTATATGAACAAGGGCGATTAAAAAACACACAATGGCAATTTGATACTCTAGAT
GTTGGTCAAGGATTGGCAAGTTTATTGGTAAAAAATCAACATGGAATTTTGTATGATACGGGAGCAAGCTGGAAAAATGG
TAGTATGGCAAAAATTGAGATTATTCCTTATCTAAGAAGACAGGGTATTATTCTTGATAAAGTTATATTAAGTCATGATG
ATAATGATCATGCAGGTGGAGTAAAAGATATTTTCCAAGCTTATCCTAATGCTGAGTTTATCAGTCCCTCATTAAAAAAG
TACGAGAATTCTCCAGAAAATAGACCGCATATTGCTTGTCAAAAAGGAAAAATATGGCATTGGCAGGGGTTATATATTGA
AGCCTTATCGCCAAGTAAAATTGTGATGAGAGCCAATAATCCGGATTCTTGTGTGCTGATAATTTCAGATGGACAGCATA
AAATATTATTAACAGGAGATGCTGATGTGGCGACTGAATATAAAATTTTGTCTGACTTGGGTAAGATTGATGTGTTACAG
GTCGGACATCATGGTAGTAAAACGTCAACCGGTGAGAAATTACTACAGCATATTCAGCCTAAAATTGCTTTAATTTCCAG
TGGACGTTGGAATCCGTGGGGATTTCCGCATCAAGATGTCGTCAAACGCTTAAATGCGGTTGAAAGTGCGGTCTATAATA
CGGCCATTTCCGGCCAAATCCGTTTAACATTTAAAGGAAAAGATATTCAAATTCAAACCGCAAGGACAGAGTTTAGCCCT
TGGTATAGAGGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-177)

Competence protein (Competence)

(210-484)

Metallo-beta-lactamase superfamily (Lactamase_B)

(560-747)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.238

100

0.512

Multiple sequence alignment