Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GS_RS01415 Genome accession   NC_002939
Coordinates   313906..315258 (-) Length   450 a.a.
NCBI ID   WP_010940957.1    Uniprot ID   Q74GG1
Organism   Geobacter sulfurreducens PCA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 308906..320258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GS_RS17795 - 309268..309375 (-) 108 WP_316445022.1 hypothetical protein -
  GS_RS01395 (GSU0281) - 309350..311110 (-) 1761 WP_235044948.1 histidine kinase N-terminal 7TM domain-containing protein -
  GS_RS01405 (GSU0283) - 311624..313426 (-) 1803 WP_010940955.1 ATP-binding protein -
  GS_RS01410 (GSU0284) dksA 313465..313821 (-) 357 WP_010940956.1 RNA polymerase-binding protein DksA -
  GS_RS01415 (GSU0285) radA 313906..315258 (-) 1353 WP_010940957.1 DNA repair protein RadA Machinery gene
  GS_RS01420 (GSU0286) - 315410..317047 (+) 1638 WP_010940958.1 HEAT repeat domain-containing protein -
  GS_RS01425 (GSU0287) - 317040..318401 (+) 1362 WP_010940959.1 HD-GYP domain-containing protein -
  GS_RS01430 (GSU0288) - 318411..318992 (-) 582 WP_010940960.1 HEAT repeat domain-containing protein -
  GS_RS01435 (GSU0289) - 319100..319432 (+) 333 WP_010940961.1 hypothetical protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 47329.63 Da        Isoelectric Point: 6.8930

>NTDB_id=21048 GS_RS01415 WP_010940957.1 313906..315258(-) (radA) [Geobacter sulfurreducens PCA]
MKTVTRYACQKCGYQSAKWLGKCPDCAAWNSFVEEVTGGGRKGAASLPAATRPVPICDVASEAETRLSCGISEFDRVLGG
GLVSGSLVLIGGDPGIGKSTILLQVMDHLARTAGPVLYVSGEESARQTKMRGERLGIGARELLVLAETSLELILSQVTAL
APRALVIDSIQTVFSANLESAPGSVSQVRECAGRLMELAKRNGIPTLLVGHVTKDGSLAGPRVLEHMVDTVLYFEGDPGH
AFRILRAVKNRFGSTNEIGVFEMKEGGLSEVRNPSELFLAERPLGVSGSAVVTTIEGSRPLLVELQALVTPSSLGVPRRT
TLGVDHNRLALLVAVLDKKVGLHLSGQDIFLNAAGGARLSEPAIDLGMVAALASSHLDKIIDPHTVIVGEVGLAGEVRAI
TQAETRVREAAKLGFTRAVIPAGSVRQVGDVPGMNVVGVKSLDEALEQLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=21048 GS_RS01415 WP_010940957.1 313906..315258(-) (radA) [Geobacter sulfurreducens PCA]
GTGAAAACCGTAACCCGTTATGCCTGCCAGAAATGCGGCTACCAATCGGCCAAATGGCTTGGGAAATGCCCCGACTGCGC
CGCCTGGAACAGTTTTGTCGAGGAAGTCACCGGCGGCGGACGAAAGGGTGCCGCCTCCCTGCCCGCAGCCACCCGCCCGG
TCCCCATCTGTGATGTGGCCAGCGAGGCGGAAACACGCCTGTCGTGCGGCATCTCCGAATTCGACCGGGTACTGGGCGGT
GGTCTCGTCTCCGGCTCCCTGGTGCTCATCGGCGGCGACCCCGGCATCGGCAAATCCACCATTCTTTTGCAAGTCATGGA
CCACCTTGCGCGGACCGCGGGACCGGTTCTCTACGTATCGGGAGAGGAATCGGCGCGACAAACAAAAATGCGCGGCGAAC
GCCTGGGCATCGGAGCACGTGAACTGCTCGTCCTCGCCGAGACCTCCCTCGAACTCATCCTGTCCCAAGTTACCGCTCTC
GCCCCCCGGGCCCTTGTGATCGACTCCATCCAGACCGTTTTCAGCGCGAACCTCGAATCGGCGCCCGGCAGCGTCAGCCA
GGTGCGCGAGTGCGCCGGCAGGCTCATGGAGCTGGCCAAGCGCAACGGCATCCCCACCCTCCTTGTGGGACACGTGACCA
AGGACGGCTCCCTGGCGGGCCCACGGGTGCTGGAGCACATGGTCGACACGGTGCTCTACTTCGAAGGGGACCCGGGGCAT
GCCTTCAGGATTCTCAGGGCCGTCAAGAACCGCTTCGGCTCAACCAATGAAATCGGTGTATTCGAGATGAAAGAGGGCGG
CCTCAGCGAAGTGAGAAACCCCTCGGAGCTCTTCCTGGCCGAACGGCCGCTCGGCGTTTCGGGGTCCGCCGTCGTCACCA
CCATCGAGGGGAGCCGACCGCTGCTGGTGGAACTGCAGGCACTGGTCACCCCCTCATCCCTGGGCGTTCCACGCCGCACC
ACTCTCGGGGTTGACCATAACCGCCTCGCGCTCCTGGTAGCCGTGCTCGACAAAAAAGTCGGCCTCCACCTGTCGGGGCA
GGACATCTTCCTGAACGCCGCCGGCGGCGCACGGCTCAGCGAGCCGGCCATCGACCTGGGCATGGTGGCGGCCCTCGCAT
CAAGCCACTTGGACAAAATAATCGATCCCCACACGGTCATTGTCGGCGAGGTGGGCCTTGCGGGGGAAGTCCGCGCCATT
ACCCAGGCGGAGACACGGGTCCGCGAGGCCGCCAAGCTGGGCTTCACACGGGCGGTTATCCCCGCCGGCAGCGTCCGACA
GGTCGGCGATGTTCCCGGCATGAACGTTGTGGGAGTGAAATCCCTGGATGAAGCGCTGGAACAGCTCTTCTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

AAA domain (AAA_25)

(76-216)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-448)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q74GG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

56.222

100

0.562
  radA Streptococcus mitis NCTC 12261

54.484

99.111

0.54
  radA Streptococcus pneumoniae Rx1

54.484

99.111

0.54
  radA Streptococcus pneumoniae D39

54.484

99.111

0.54
  radA Streptococcus pneumoniae R6

54.484

99.111

0.54
  radA Streptococcus pneumoniae TIGR4

54.484

99.111

0.54
  radA Streptococcus mitis SK321

54.484

99.111

0.54

Multiple sequence alignment