Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CSR56_RS05650 Genome accession   NZ_CP024090
Coordinates   1108634..1109149 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain WG5     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103634..1114149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSR56_RS05600 (CSR56_05595) csrA 1103947..1104132 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CSR56_RS05635 (CSR56_05630) yqaB 1105864..1106430 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CSR56_RS05640 (CSR56_05635) yqaA 1106427..1106855 (+) 429 WP_001287454.1 YqaA family protein -
  CSR56_RS05645 (CSR56_05640) gshA 1106928..1108484 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CSR56_RS05650 (CSR56_05645) luxS 1108634..1109149 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CSR56_RS05655 (CSR56_05650) emrB 1109213..1110751 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CSR56_RS05660 (CSR56_05655) emrA 1110768..1111940 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CSR56_RS05665 (CSR56_05660) emrR 1112067..1112586 (-) 520 Protein_1042 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CSR56_RS05670 (CSR56_05665) ygaH 1112677..1113012 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CSR56_RS05675 (CSR56_05670) ygaZ 1113002..1113739 (-) 738 WP_000445651.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=210474 CSR56_RS05650 WP_001130211.1 1108634..1109149(+) (luxS) [Escherichia coli strain WG5]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=210474 CSR56_RS05650 WP_001130211.1 1108634..1109149(+) (luxS) [Escherichia coli strain WG5]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment