Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   BTV17_RS04620 Genome accession   NZ_CP018806
Coordinates   937306..939732 (+) Length   808 a.a.
NCBI ID   WP_075294360.1    Uniprot ID   A0A9Q6Z1W9
Organism   Histophilus somni strain USDA-ARS-USMARC-63370     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 932306..944732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTV17_RS04595 (BTV17_04580) nagB 932357..933163 (+) 807 WP_012340645.1 glucosamine-6-phosphate deaminase -
  BTV17_RS04600 (BTV17_04585) nagA 933176..934324 (+) 1149 WP_012340644.1 N-acetylglucosamine-6-phosphate deacetylase -
  BTV17_RS04605 (BTV17_04590) folK 934422..934898 (-) 477 WP_012340643.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  BTV17_RS04610 (BTV17_04595) pcnB 934895..936268 (-) 1374 WP_232451468.1 polynucleotide adenylyltransferase PcnB -
  BTV17_RS04615 (BTV17_04600) dksA 936570..937007 (-) 438 WP_012340641.1 RNA polymerase-binding protein DksA -
  BTV17_RS04620 (BTV17_04605) rec2 937306..939732 (+) 2427 WP_075294360.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  BTV17_RS04625 (BTV17_04610) msbA 939784..941532 (+) 1749 WP_041605303.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  BTV17_RS04630 (BTV17_04615) rlmKL 941579..943735 (+) 2157 WP_075294361.1 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL -

Sequence

Protein


Download         Length: 808 a.a.        Molecular weight: 92375.80 Da        Isoelectric Point: 9.6461

>NTDB_id=210455 BTV17_RS04620 WP_075294360.1 937306..939732(+) (rec2) [Histophilus somni strain USDA-ARS-USMARC-63370]
MKFNLDHYLFVILASAMTLLISPRIFLLNWQWILILCLVLGLGYIGVKAVFFRCVLKLFFIFVLGLGFFHYQALNLLEQS
EHITRLPKKVQTNVKIAEIIQQKDYQAVIAEGKFTSSLPTQRIYLNWRTEQEVQVGEIWQVNMHIRPISSRLNIGGFDRQ
TWYLAKEITAYATVKSAVKIGEDFSWRATRLNQALQQTSNLVSQGLLLALGFGERAWLDKELWQLYQQTNTAHLIAISGL
HIGLAMFIGFTLGRAIQLLFPTRYIEPYFPLILGLFLAFCYAELAGFSIPTFRAIVALFIVCLCRICRVSYNVWQLFLRV
ICVLLILNPFMLLSASFWLSIGAVGCLIMWYQWIPLNLFLWKEKPLAQSSLKKVRYFIGLFHLQFGLLWFFTPIQLLIFN
GIALNGFWANLLLLPLFSFLLVPLILFAVLTEGALNSWNIANQLAIWINQLLKLLPNQWINISLAESYFISAILALLFTL
CCKWIIKCSTDDDLSLLRKVRKKSFYPIRLNFSDGFSHKKYQYGMVVSSAMFVIFLCLWFFSLYEQGRLKNTQWQFDTLD
VGQGLASLLVKNQHGILYDTGASWKNGSMAKIEIIPYLRRQGIILDKVILSHDDNDHAGGVKDIFQAYPNAEFISPSLKK
YENSPENRPHIACQKGKIWHWQGLYIEALSPSKIVMRANNPDSCVLIISDGQHKILLTGDADVATEYKILSDLGKIDVLQ
VGHHGSKTSTGEKLLQHIQPKIALISSGRWNPWGFPHQDVVKRLNAVESAVYNTAISGQIRLTFKGKDIQIQTARTEFSP
WYRGLIGL

Nucleotide


Download         Length: 2427 bp        

>NTDB_id=210455 BTV17_RS04620 WP_075294360.1 937306..939732(+) (rec2) [Histophilus somni strain USDA-ARS-USMARC-63370]
ATGAAATTCAACCTTGATCATTACCTTTTTGTTATTTTAGCGAGTGCAATGACATTGCTAATTTCGCCTCGTATTTTTTT
ATTGAATTGGCAATGGATATTGATCTTATGTCTTGTTCTTGGGTTAGGATATATTGGTGTTAAAGCAGTATTTTTTCGCT
GTGTTCTAAAGCTATTTTTCATTTTTGTTCTTGGGTTGGGATTTTTTCATTATCAAGCATTAAACTTGTTGGAACAAAGT
GAGCATATTACCCGCTTACCTAAAAAAGTACAAACTAACGTTAAAATAGCTGAAATTATTCAGCAGAAAGACTATCAAGC
AGTGATCGCAGAAGGAAAATTCACCTCATCTTTGCCAACACAGCGAATTTATTTAAATTGGCGTACTGAGCAAGAAGTTC
AAGTTGGTGAAATTTGGCAAGTAAATATGCACATTCGTCCGATTTCTTCTCGATTAAATATAGGAGGATTTGATCGTCAA
ACCTGGTATTTAGCAAAAGAAATTACAGCTTATGCCACAGTAAAAAGTGCGGTGAAAATTGGTGAGGATTTTTCTTGGCG
AGCTACTCGACTGAATCAAGCTTTACAACAAACTTCCAATTTAGTTTCACAAGGTTTATTGCTTGCATTGGGTTTTGGTG
AAAGAGCATGGCTAGACAAGGAATTATGGCAACTCTATCAACAAACCAATACCGCACATTTAATTGCAATTTCAGGGTTG
CATATTGGGTTAGCTATGTTCATCGGTTTTACATTAGGGCGAGCTATTCAATTATTATTCCCTACTCGTTATATTGAACC
TTATTTTCCTTTAATATTAGGGCTTTTTTTAGCATTCTGTTATGCAGAATTGGCGGGATTTTCAATTCCTACTTTTCGTG
CGATTGTCGCTTTATTTATAGTTTGTTTATGTCGTATATGTCGAGTTTCCTATAATGTTTGGCAACTATTTTTGCGGGTT
ATTTGTGTTTTACTGATACTTAATCCATTTATGTTATTGTCAGCCAGTTTTTGGCTATCAATCGGAGCGGTAGGTTGTTT
GATCATGTGGTATCAATGGATACCGCTAAATTTATTTTTATGGAAAGAAAAGCCTTTGGCACAATCTTCCTTGAAAAAAG
TGCGGTATTTTATCGGTCTTTTTCATTTGCAATTTGGGCTTTTGTGGTTTTTTACACCTATCCAACTCTTAATTTTTAAC
GGTATTGCCTTAAATGGATTTTGGGCTAATTTATTATTGTTGCCTTTGTTCAGTTTTTTGTTAGTTCCACTTATTCTTTT
TGCTGTACTGACGGAAGGTGCGTTAAATAGTTGGAATATAGCTAATCAGCTTGCTATATGGATCAATCAATTGTTAAAGC
TGTTACCAAATCAGTGGATCAATATTTCTCTTGCAGAAAGCTATTTTATTTCAGCTATATTAGCTTTGCTCTTCACCTTA
TGCTGTAAATGGATTATTAAGTGTTCAACCGACGATGATTTATCTTTATTGAGAAAAGTTAGAAAAAAAAGTTTTTACCC
TATACGGTTGAATTTTTCGGACGGTTTTTCACATAAAAAATATCAATATGGTATGGTGGTCAGTTCAGCTATGTTTGTTA
TTTTTTTATGTCTGTGGTTTTTTTCGCTATATGAACAAGGGCGATTAAAAAACACACAATGGCAATTTGATACTCTAGAT
GTTGGTCAAGGATTGGCAAGTTTATTGGTAAAAAATCAACATGGAATTTTGTATGATACGGGAGCAAGCTGGAAAAATGG
TAGTATGGCAAAAATTGAGATTATTCCTTATCTAAGAAGACAGGGTATTATTCTTGATAAAGTTATATTAAGTCATGATG
ATAATGATCATGCAGGTGGAGTAAAAGATATTTTCCAAGCTTATCCTAATGCTGAGTTTATCAGTCCCTCATTAAAAAAG
TACGAGAATTCTCCAGAAAATAGACCGCATATTGCTTGTCAAAAAGGAAAAATATGGCATTGGCAGGGGTTATATATTGA
AGCCTTATCGCCAAGTAAAATTGTGATGAGAGCCAATAATCCGGATTCTTGTGTGCTGATAATTTCAGATGGACAGCATA
AAATATTATTAACAGGAGATGCTGATGTGGCGACTGAATATAAAATTTTGTCTGACTTGGGTAAGATTGATGTGTTACAG
GTCGGACATCATGGTAGTAAAACGTCAACCGGTGAGAAATTACTACAGCATATTCAGCCTAAAATTGCTTTAATTTCCAG
TGGACGTTGGAATCCGTGGGGATTTCCGCATCAAGATGTCGTCAAACGCTTAAATGCGGTTGAAAGTGCGGTCTATAATA
CGGCCATTTCCGGCCAAATCCGTTTAACATTTAAAGGAAAAGATATTCAAATTCAAACCGCAAGGACAGAGTTTAGCCCT
TGGTATAGAGGATTAATTGGCTTGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-177)

Competence protein (Competence)

(210-484)

Metallo-beta-lactamase superfamily (Lactamase_B)

(560-747)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

51.238

100

0.512

Multiple sequence alignment