Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CSR56_RS00365 Genome accession   NZ_CP024090
Coordinates   68759..69427 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain WG5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 63759..74427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSR56_RS00330 (CSR56_00325) yicC 63778..64641 (-) 864 WP_047402644.1 YicC/YloC family endoribonuclease -
  CSR56_RS00340 (CSR56_00335) rph 64768..65484 (+) 717 WP_001247089.1 ribonuclease PH -
  CSR56_RS00345 (CSR56_00340) pyrE 65550..66191 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CSR56_RS00350 (CSR56_00345) slmA 66228..66824 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CSR56_RS00355 (CSR56_00350) dut 66931..67389 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CSR56_RS00360 (CSR56_00355) coaBC 67367..68587 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CSR56_RS00365 (CSR56_00360) radC 68759..69427 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CSR56_RS00370 (CSR56_00365) rpmB 69644..69880 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CSR56_RS00375 (CSR56_00370) rpmG 69901..70068 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CSR56_RS00380 (CSR56_00375) mutM 70166..70975 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CSR56_RS00385 (CSR56_00380) coaD 71014..71493 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CSR56_RS00390 (CSR56_00385) waaA 71501..72778 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CSR56_RS00395 (CSR56_00390) rfaQ 73191..74249 (+) 1059 WP_001514654.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=210452 CSR56_RS00365 WP_001297375.1 68759..69427(+) (radC) [Escherichia coli strain WG5]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=210452 CSR56_RS00365 WP_001297375.1 68759..69427(+) (radC) [Escherichia coli strain WG5]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGTGTTCATGGAATTGGCGTAGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGACGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment