Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC73_RS10315 Genome accession   NZ_CP024082
Coordinates   2209252..2209728 (+) Length   158 a.a.
NCBI ID   WP_000148678.1    Uniprot ID   A0A2J9V1L1
Organism   Vibrio cholerae strain FORC_073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2204252..2214728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS10275 (FORC73_1944) - 2204600..2204899 (+) 300 WP_033928247.1 type VI secretion system PAAR protein -
  FORC73_RS10280 (FORC73_1945) - 2205107..2205895 (+) 789 WP_033928280.1 glycosyl hydrolase -
  FORC73_RS10285 (FORC73_1946) - 2205906..2206205 (+) 300 WP_001117493.1 type VI secretion system PAAR protein -
  FORC73_RS10290 (FORC73_1947) - 2206414..2207202 (+) 789 WP_033928278.1 glycosyl hydrolase -
  FORC73_RS19710 (FORC73_1948) - 2207213..2207344 (+) 132 Protein_1936 PAAR domain-containing protein -
  FORC73_RS10300 (FORC73_1949) - 2207532..2208161 (+) 630 WP_119783269.1 DUF2628 domain-containing protein -
  FORC73_RS10305 (FORC73_1950) - 2208234..2208773 (+) 540 WP_119783270.1 hypothetical protein -
  FORC73_RS10310 (FORC73_1951) - 2208932..2209108 (-) 177 WP_001211491.1 AlpA family transcriptional regulator -
  FORC73_RS10315 (FORC73_1952) radC 2209252..2209728 (+) 477 WP_000148678.1 DNA repair protein RadC Machinery gene
  FORC73_RS10320 - 2209725..2210153 (+) 429 WP_000634666.1 DUF2787 family protein -
  FORC73_RS10325 (FORC73_1954) - 2210204..2210650 (+) 447 WP_000065403.1 DUF2787 domain-containing protein -
  FORC73_RS10330 (FORC73_1955) - 2210753..2211739 (+) 987 WP_002044218.1 GTPase family protein -
  FORC73_RS10335 (FORC73_1956) - 2211774..2212415 (-) 642 WP_080284354.1 inovirus Gp2 family protein -
  FORC73_RS10340 (FORC73_1957) - 2212853..2213860 (+) 1008 WP_032475262.1 CopG family transcriptional regulator -
  FORC73_RS10345 (FORC73_1958) - 2213953..2214153 (-) 201 WP_032475261.1 AlpA family transcriptional regulator -
  FORC73_RS10350 (FORC73_1959) - 2214245..2214535 (-) 291 WP_000639510.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18292.74 Da        Isoelectric Point: 6.9191

>NTDB_id=210420 FORC73_RS10315 WP_000148678.1 2209252..2209728(+) (radC) [Vibrio cholerae strain FORC_073]
MTHFPRHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEMFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210420 FORC73_RS10315 WP_000148678.1 2209252..2209728(+) (radC) [Vibrio cholerae strain FORC_073]
ATGACTCATTTCCCTCGCCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTGCGCTGTAAACTTGCTG
GATATGAGCACGAAATGTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGC
ACGGTCGACGCCGCCAGTGTCTACCCAAGAGAGGTACTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAATCACCCCTCTGGCGATCCTGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTCGATATTCGTGTGCTAGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J9V1L1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.286

88.608

0.437

Multiple sequence alignment