Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC73_RS05590 Genome accession   NZ_CP024082
Coordinates   1163654..1164130 (-) Length   158 a.a.
NCBI ID   WP_000148673.1    Uniprot ID   -
Organism   Vibrio cholerae strain FORC_073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1158654..1169130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC73_RS05560 (FORC73_1031) - 1159285..1159485 (+) 201 WP_001293720.1 AlpA family transcriptional regulator -
  FORC73_RS05565 (FORC73_1032) - 1159578..1160585 (-) 1008 WP_001908034.1 CopG family transcriptional regulator -
  FORC73_RS05570 - 1160966..1161606 (+) 641 Protein_1030 inovirus Gp2 family protein -
  FORC73_RS05575 (FORC73_1035) - 1161641..1162627 (-) 987 WP_119783124.1 GTPase family protein -
  FORC73_RS05580 (FORC73_1036) - 1162734..1163180 (-) 447 WP_001280123.1 DUF2787 domain-containing protein -
  FORC73_RS05585 (FORC73_1037) - 1163229..1163657 (-) 429 WP_000634667.1 DUF2787 domain-containing protein -
  FORC73_RS05590 (FORC73_1038) radC 1163654..1164130 (-) 477 WP_000148673.1 DNA repair protein RadC Machinery gene
  FORC73_RS05595 (FORC73_1039) - 1164274..1164450 (+) 177 WP_001211490.1 AlpA family transcriptional regulator -
  FORC73_RS05600 (FORC73_1040) - 1164597..1166942 (-) 2346 WP_001211293.1 exo-alpha-sialidase -
  FORC73_RS05605 (FORC73_1041) nagA 1167365..1168501 (-) 1137 WP_119783125.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18255.66 Da        Isoelectric Point: 6.7719

>NTDB_id=210401 FORC73_RS05590 WP_000148673.1 1163654..1164130(-) (radC) [Vibrio cholerae strain FORC_073]
MTHFPHHRYLLSQRAYEHRVLEEAAEILEQRYVRGETFARTENTTEYLRCKLAGYEHEIFAVLFLDNQHRLIEFKELFRG
TVDAASVYPREVLKEALNVNAAAVIFAHNHPSGDPEPSQADRRITQRLKDALSLVDIRVLDHVVVGKSSVSFAERGWL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=210401 FORC73_RS05590 WP_000148673.1 1163654..1164130(-) (radC) [Vibrio cholerae strain FORC_073]
ATGACTCATTTCCCTCACCACCGCTATCTACTCTCGCAACGAGCTTATGAGCATCGAGTACTGGAAGAAGCAGCAGAGAT
CCTTGAACAGCGTTATGTGCGCGGTGAAACCTTTGCACGTACGGAAAACACCACGGAATACTTACGCTGTAAACTTGCTG
GATATGAGCACGAAATCTTTGCCGTACTGTTTTTGGATAACCAGCATCGGCTAATTGAATTTAAGGAGCTATTTCGCGGT
ACGGTCGATGCCGCCAGTGTCTACCCAAGAGAGGTATTAAAGGAGGCACTAAACGTTAACGCAGCAGCGGTGATCTTTGC
CCATAATCACCCCTCTGGCGATCCGGAGCCTTCACAAGCCGATAGGCGTATTACTCAGCGCTTAAAAGACGCCTTATCAC
TGGTAGATATTCGTGTGCTAGACCATGTGGTCGTTGGCAAAAGCAGTGTGTCATTTGCAGAAAGGGGCTGGCTATGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(41-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.286

88.608

0.437

Multiple sequence alignment