Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | DET_RS00275 | Genome accession | NC_002936 |
| Coordinates | 53762..55150 (+) | Length | 462 a.a. |
| NCBI ID | WP_010935866.1 | Uniprot ID | Q3ZAD8 |
| Organism | Dehalococcoides mccartyi 195 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 48762..60150
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DET_RS00270 (DET0057) | - | 51068..53542 (+) | 2475 | WP_010935865.1 | ATP-dependent Clp protease ATP-binding subunit | - |
| DET_RS00275 (DET0058) | radA | 53762..55150 (+) | 1389 | WP_010935866.1 | DNA repair protein RadA | Machinery gene |
| DET_RS00280 (DET0059) | - | 55137..55820 (+) | 684 | WP_010935867.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| DET_RS00285 (DET0060) | ispF | 55826..56299 (+) | 474 | WP_010935868.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| DET_RS00290 (DET0061) | cysS | 56303..57679 (+) | 1377 | WP_010935869.1 | cysteine--tRNA ligase | - |
| DET_RS08750 | - | 58349..59440 (-) | 1092 | Protein_57 | recombinase family protein | - |
Sequence
Protein
Download Length: 462 a.a. Molecular weight: 49545.99 Da Isoelectric Point: 7.6049
>NTDB_id=21031 DET_RS00275 WP_010935866.1 53762..55150(+) (radA) [Dehalococcoides mccartyi 195]
MEKSRRVYVCSNCGRESLKWLGRCPACQEWNTFEEKTVVSPIGRKNEPARVISPAAELSSLQASETTRRSLSISEFNRVL
GGGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIKMRAQRLGISGEGLFLMAETDLNAILAQLS
VLCPLLVVIDSIQTVFLPELEAAPGAINQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGES
QSAYRLVRSVKNRFGSTNEVGIFEMKSEGLVEVANPSQIFLSNRQANTVGSAVTAVLEGSRPLLVEVQALTNTTSFGQPR
RTANGVDFNRTLMIAAVLSKRLSMRLGTQDIIVNATGGIRLDEPAADLAIALAIASSYRDTGVCPETIALGEIGLSGELR
TIPHLERRLSEASRLGFKRALVPAGANCHNVHNIQIIPVSTVKEAVKLALTGVKTETEDVFE
MEKSRRVYVCSNCGRESLKWLGRCPACQEWNTFEEKTVVSPIGRKNEPARVISPAAELSSLQASETTRRSLSISEFNRVL
GGGIVPGSLMLLGGEPGIGKSTLLLQVAASVAQSGGKVVYVSGEENPAQIKMRAQRLGISGEGLFLMAETDLNAILAQLS
VLCPLLVVIDSIQTVFLPELEAAPGAINQVRESALRLMQWAKSSGASVFITAHVTKEGNIAGPRILEHIVDVVMYFEGES
QSAYRLVRSVKNRFGSTNEVGIFEMKSEGLVEVANPSQIFLSNRQANTVGSAVTAVLEGSRPLLVEVQALTNTTSFGQPR
RTANGVDFNRTLMIAAVLSKRLSMRLGTQDIIVNATGGIRLDEPAADLAIALAIASSYRDTGVCPETIALGEIGLSGELR
TIPHLERRLSEASRLGFKRALVPAGANCHNVHNIQIIPVSTVKEAVKLALTGVKTETEDVFE
Nucleotide
Download Length: 1389 bp
>NTDB_id=21031 DET_RS00275 WP_010935866.1 53762..55150(+) (radA) [Dehalococcoides mccartyi 195]
ATGGAAAAAAGCCGTAGAGTTTATGTTTGTTCCAACTGCGGGCGTGAGAGCCTGAAATGGCTGGGCCGCTGCCCCGCCTG
TCAGGAGTGGAATACTTTTGAAGAAAAAACGGTTGTTTCGCCCATAGGGCGTAAAAATGAACCTGCCCGGGTTATCAGCC
CGGCGGCAGAGCTTTCCAGTTTACAGGCATCCGAAACCACCCGGCGGAGTTTATCCATTTCGGAGTTTAACCGGGTTTTA
GGCGGCGGCATAGTGCCGGGTTCGCTTATGCTTTTAGGGGGTGAACCGGGCATCGGCAAATCCACTCTGCTTCTTCAGGT
GGCGGCTTCGGTAGCCCAAAGCGGCGGCAAGGTAGTATATGTATCCGGGGAAGAAAACCCCGCCCAGATAAAAATGCGCG
CCCAACGCCTGGGTATCAGCGGCGAAGGGCTTTTTCTTATGGCTGAGACTGACCTTAATGCCATTTTAGCCCAGCTTTCA
GTCCTCTGCCCGTTACTGGTCGTTATTGACTCTATCCAGACTGTATTTCTGCCGGAGCTTGAAGCCGCACCCGGTGCTAT
AAATCAGGTGCGTGAGTCAGCCCTCCGCCTGATGCAGTGGGCTAAAAGCAGCGGAGCCAGCGTATTTATAACCGCCCATG
TTACCAAAGAGGGAAACATAGCCGGGCCGCGTATACTGGAACATATAGTAGATGTGGTTATGTACTTTGAGGGAGAGTCC
CAGAGTGCTTACCGTTTAGTGCGTTCGGTAAAAAACCGTTTCGGTTCTACCAACGAAGTGGGTATATTTGAAATGAAAAG
TGAGGGTCTGGTAGAAGTAGCCAACCCTTCCCAGATATTTTTATCAAACCGCCAGGCAAATACGGTCGGCTCGGCTGTAA
CCGCTGTGCTGGAGGGCAGCCGCCCGCTGCTGGTTGAAGTGCAGGCACTTACCAATACCACCAGTTTCGGCCAGCCCCGC
CGCACCGCCAACGGGGTGGATTTTAACCGTACCCTTATGATAGCCGCTGTCCTCTCCAAACGCCTGTCCATGCGTTTAGG
TACCCAGGACATAATAGTCAACGCTACCGGCGGTATCCGTCTGGATGAGCCGGCCGCAGATTTAGCTATAGCTCTGGCCA
TTGCTTCCAGTTACCGGGATACCGGCGTCTGCCCAGAAACCATTGCTCTTGGGGAGATTGGTCTTTCTGGTGAACTGCGG
ACTATTCCCCATCTGGAAAGGCGTCTTTCCGAGGCCAGCCGTCTGGGTTTTAAGAGGGCTTTAGTACCGGCCGGTGCTAA
CTGCCACAATGTACATAATATCCAGATAATTCCGGTTTCAACTGTCAAAGAGGCGGTGAAGCTGGCACTTACCGGGGTAA
AAACGGAGACCGAAGATGTTTTTGAATGA
ATGGAAAAAAGCCGTAGAGTTTATGTTTGTTCCAACTGCGGGCGTGAGAGCCTGAAATGGCTGGGCCGCTGCCCCGCCTG
TCAGGAGTGGAATACTTTTGAAGAAAAAACGGTTGTTTCGCCCATAGGGCGTAAAAATGAACCTGCCCGGGTTATCAGCC
CGGCGGCAGAGCTTTCCAGTTTACAGGCATCCGAAACCACCCGGCGGAGTTTATCCATTTCGGAGTTTAACCGGGTTTTA
GGCGGCGGCATAGTGCCGGGTTCGCTTATGCTTTTAGGGGGTGAACCGGGCATCGGCAAATCCACTCTGCTTCTTCAGGT
GGCGGCTTCGGTAGCCCAAAGCGGCGGCAAGGTAGTATATGTATCCGGGGAAGAAAACCCCGCCCAGATAAAAATGCGCG
CCCAACGCCTGGGTATCAGCGGCGAAGGGCTTTTTCTTATGGCTGAGACTGACCTTAATGCCATTTTAGCCCAGCTTTCA
GTCCTCTGCCCGTTACTGGTCGTTATTGACTCTATCCAGACTGTATTTCTGCCGGAGCTTGAAGCCGCACCCGGTGCTAT
AAATCAGGTGCGTGAGTCAGCCCTCCGCCTGATGCAGTGGGCTAAAAGCAGCGGAGCCAGCGTATTTATAACCGCCCATG
TTACCAAAGAGGGAAACATAGCCGGGCCGCGTATACTGGAACATATAGTAGATGTGGTTATGTACTTTGAGGGAGAGTCC
CAGAGTGCTTACCGTTTAGTGCGTTCGGTAAAAAACCGTTTCGGTTCTACCAACGAAGTGGGTATATTTGAAATGAAAAG
TGAGGGTCTGGTAGAAGTAGCCAACCCTTCCCAGATATTTTTATCAAACCGCCAGGCAAATACGGTCGGCTCGGCTGTAA
CCGCTGTGCTGGAGGGCAGCCGCCCGCTGCTGGTTGAAGTGCAGGCACTTACCAATACCACCAGTTTCGGCCAGCCCCGC
CGCACCGCCAACGGGGTGGATTTTAACCGTACCCTTATGATAGCCGCTGTCCTCTCCAAACGCCTGTCCATGCGTTTAGG
TACCCAGGACATAATAGTCAACGCTACCGGCGGTATCCGTCTGGATGAGCCGGCCGCAGATTTAGCTATAGCTCTGGCCA
TTGCTTCCAGTTACCGGGATACCGGCGTCTGCCCAGAAACCATTGCTCTTGGGGAGATTGGTCTTTCTGGTGAACTGCGG
ACTATTCCCCATCTGGAAAGGCGTCTTTCCGAGGCCAGCCGTCTGGGTTTTAAGAGGGCTTTAGTACCGGCCGGTGCTAA
CTGCCACAATGTACATAATATCCAGATAATTCCGGTTTCAACTGTCAAAGAGGCGGTGAAGCTGGCACTTACCGGGGTAA
AAACGGAGACCGAAGATGTTTTTGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
49.891 |
99.351 |
0.496 |
| radA | Streptococcus pneumoniae Rx1 |
48.578 |
98.918 |
0.481 |
| radA | Streptococcus pneumoniae D39 |
48.578 |
98.918 |
0.481 |
| radA | Streptococcus pneumoniae R6 |
48.578 |
98.918 |
0.481 |
| radA | Streptococcus pneumoniae TIGR4 |
48.578 |
98.918 |
0.481 |
| radA | Streptococcus mitis SK321 |
48.578 |
98.918 |
0.481 |
| radA | Streptococcus mitis NCTC 12261 |
48.359 |
98.918 |
0.478 |