Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   FAM21731_RS04115 Genome accession   NZ_CP018796
Coordinates   846968..848719 (-) Length   583 a.a.
NCBI ID   WP_075141139.1    Uniprot ID   -
Organism   Lentilactobacillus parabuchneri strain FAM21731     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 846968..861431 846968..848719 within 0


Gene organization within MGE regions


Location: 846968..861431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAM21731_RS04115 (FAM21731_00848) rcrQ 846968..848719 (-) 1752 WP_075141139.1 ABC transporter ATP-binding protein Regulator
  FAM21731_RS04120 (FAM21731_00849) rcrP 848719..850482 (-) 1764 WP_057909627.1 ABC transporter ATP-binding protein Regulator
  FAM21731_RS04125 (FAM21731_00850) - 850683..851378 (-) 696 WP_057909628.1 glycerophosphodiester phosphodiesterase family protein -
  FAM21731_RS04130 (FAM21731_00851) - 851454..852818 (-) 1365 WP_057909629.1 ABC transporter substrate-binding protein -
  FAM21731_RS04135 (FAM21731_00852) - 852815..853645 (-) 831 WP_057909630.1 carbohydrate ABC transporter permease -
  FAM21731_RS04140 (FAM21731_00853) - 853645..854607 (-) 963 WP_075141140.1 carbohydrate ABC transporter permease -
  FAM21731_RS04145 (FAM21731_00854) - 854600..855688 (-) 1089 WP_057909632.1 ABC transporter ATP-binding protein -
  FAM21731_RS04150 (FAM21731_00855) - 856116..856628 (-) 513 WP_057909633.1 helix-turn-helix domain-containing protein -
  FAM21731_RS04155 (FAM21731_00857) - 857149..857571 (-) 423 WP_057909634.1 hypothetical protein -
  FAM21731_RS04165 (FAM21731_00859) - 857912..860695 (+) 2784 WP_075141141.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 583 a.a.        Molecular weight: 64702.31 Da        Isoelectric Point: 6.6724

>NTDB_id=210266 FAM21731_RS04115 WP_075141139.1 846968..848719(-) (rcrQ) [Lentilactobacillus parabuchneri strain FAM21731]
MTKQTNLIPGIKKYGRPYIPQVIIAVFLAAFGNIATIVGPNQLSKITNLISKGLRGSIDVSQVMRIVVILGIIYGVGALM
SYGQGFLMANVSQNFTRDLRTKISQKINRLPISYYDKHDEGDTLSRVTNDLDTFGQALNQSLGTLISSIVLIVGTILMMT
VTNWILSLTAIVSAFIGIVLTVVLLQHSQKYFNQQQNNLADVSGYVEEVYSGHQVVKTYNGTKNAKKEFTDRNQKLASSV
WKSQFISGIMQPLMTFIGNLSYVSVSVIGALLVLNNTISIGVVVAFMVYVRIFTQPLSQVTQAFSSLQSAKAALHRVFEF
LEEPDDQADQDADTELKDVKGRIDFEHVSFGYNHNETIIKDFNAHIEPGEKVAIVGPTGSGKTTLISLLMGFYQIDEGSI
KIDNKNINTITKQSIRDQFDMVLQDAWLFEDTIMNNLKYNDPNIDDDQVIEAAKSVGIDHFIRTLPKGYDTVLNDSVTLS
VGQKQLMTIARALVRNRPMLILDEATSSVDTRTEEQLQKAMDILTKGRTSLVIAHRLSTIKNADKIIVLKDGKILETGNH
QELMNENGFYASLYNSQFESLTA

Nucleotide


Download         Length: 1752 bp        

>NTDB_id=210266 FAM21731_RS04115 WP_075141139.1 846968..848719(-) (rcrQ) [Lentilactobacillus parabuchneri strain FAM21731]
ATGACAAAACAAACGAATTTAATTCCCGGTATCAAAAAATATGGTAGACCTTATATTCCTCAAGTAATTATTGCTGTTTT
CCTTGCGGCATTTGGCAATATTGCGACAATTGTGGGTCCTAATCAACTAAGTAAAATTACGAACTTAATTTCCAAGGGGC
TTCGGGGGAGCATTGATGTCAGCCAGGTTATGAGAATTGTGGTAATCTTAGGGATCATCTATGGCGTCGGCGCACTGATG
TCTTACGGACAAGGGTTTTTGATGGCAAATGTTTCGCAGAATTTTACCCGAGATTTGAGAACTAAGATTAGTCAGAAGAT
TAATCGTTTACCGATTTCCTATTATGACAAGCACGATGAGGGTGACACCTTAAGTCGGGTTACCAATGACTTGGATACTT
TTGGTCAGGCCCTCAACCAAAGCTTAGGAACACTCATATCATCTATTGTGTTGATTGTTGGAACCATTCTCATGATGACG
GTCACTAACTGGATTCTGAGTCTCACGGCAATTGTGTCCGCCTTTATCGGAATTGTTCTAACCGTTGTTCTTCTTCAGCA
CTCTCAAAAGTATTTTAACCAGCAACAGAACAATCTCGCTGACGTATCGGGCTATGTTGAAGAAGTTTATTCCGGCCATC
AGGTGGTCAAAACTTATAATGGCACTAAAAATGCGAAGAAAGAATTTACAGACCGCAACCAGAAATTGGCAAGCAGTGTT
TGGAAATCTCAATTCATTTCCGGAATTATGCAGCCATTGATGACATTTATCGGGAACTTAAGTTACGTTTCCGTGAGTGT
AATTGGCGCTTTGCTGGTGTTAAACAATACAATTTCAATCGGCGTAGTTGTCGCCTTCATGGTATATGTTAGAATTTTCA
CACAACCACTTTCTCAAGTCACTCAAGCATTTTCCAGCCTCCAGTCAGCTAAAGCTGCATTGCACCGAGTCTTTGAGTTT
CTCGAAGAACCAGATGATCAAGCTGACCAGGATGCAGACACTGAATTAAAGGATGTCAAAGGCCGGATTGATTTCGAACA
CGTTTCTTTTGGTTATAATCACAATGAAACAATTATTAAGGACTTTAATGCCCATATCGAACCTGGCGAAAAAGTAGCCA
TTGTTGGCCCAACAGGTTCAGGAAAGACGACGTTAATTAGTTTATTAATGGGCTTTTATCAAATTGACGAAGGCTCGATT
AAGATTGATAATAAAAACATTAACACCATCACGAAGCAAAGCATCCGTGATCAGTTTGATATGGTTCTCCAGGATGCTTG
GCTCTTTGAAGATACCATCATGAACAATTTGAAATATAATGATCCAAACATTGATGATGATCAAGTAATTGAAGCGGCCA
AATCGGTTGGTATTGATCATTTTATCCGAACGTTGCCAAAAGGGTACGATACCGTTCTTAATGATTCAGTAACGCTATCT
GTTGGCCAAAAACAGTTAATGACAATTGCAAGAGCGCTTGTTCGAAATCGGCCAATGTTGATTTTGGATGAAGCTACTAG
TTCAGTTGATACTCGAACTGAAGAACAGCTTCAAAAAGCCATGGACATTTTGACCAAAGGACGCACATCGCTGGTAATTG
CCCATCGATTGTCAACAATCAAAAATGCCGACAAAATTATTGTGCTTAAAGATGGTAAAATCTTAGAGACAGGAAATCAT
CAAGAATTGATGAATGAAAATGGCTTCTATGCTAGTCTGTACAACAGTCAATTTGAAAGTCTAACTGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(360-507)

ABC transporter transmembrane region (ABC_membrane)

(22-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.167

98.799

0.535

Multiple sequence alignment