Detailed information NTG0210250

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CVIC12175_RS01115
• Genome accession: NZ_CP018793
• Coordinates: 207325..208245 (-)
• Length: 306 a.a.
• NCBI ID: WP_086315797.1
• Uniprot ID: -
• Organism: Campylobacter vicugnae strain RM12175
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 202325..213245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVIC12175_RS01090 (CVIC12175_0215)	gmhB	202589..203086 (+)	498	WP_086257040.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
CVIC12175_RS01095 (CVIC12175_0216)	rfaD	203083..204048 (+)	966	WP_086257041.1	ADP-glyceromanno-heptose 6-epimerase	-
CVIC12175_RS01100 (CVIC12175_0217)	rfaE1	204048..205424 (+)	1377	WP_086257043.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CVIC12175_RS01105 (CVIC12175_0218)	gmhA	205434..205991 (+)	558	WP_086257045.1	D-sedoheptulose 7-phosphate isomerase	-
CVIC12175_RS08580	-	206035..206226 (+)	192	WP_201791009.1	hypothetical protein	-
CVIC12175_RS08585 (CVIC12175_0219)	-	206178..207293 (+)	1116	WP_201791010.1	restriction endonuclease subunit S	-
CVIC12175_RS01115 (CVIC12175_0221)	waaF	207325..208245 (-)	921	WP_086315797.1	lipopolysaccharide heptosyltransferase II	Regulator
CVIC12175_RS01120 (CVIC12175_0222)	-	208229..209248 (-)	1020	WP_086315798.1	glycosyltransferase family 4 protein	-
CVIC12175_RS01125 (CVIC12175_0223)	-	209285..210346 (-)	1062	WP_086302899.1	glycosyltransferase family 9 protein	-
CVIC12175_RS01130 (CVIC12175_0224)	-	210343..211206 (-)	864	WP_086302897.1	lipid A biosynthesis lauroyl acyltransferase	-
CVIC12175_RS01135 (CVIC12175_0225)	waaC	211199..212164 (-)	966	WP_086302895.1	lipopolysaccharide heptosyltransferase I	-
CVIC12175_RS01140 (CVIC12175_0226)	-	212225..213034 (+)	810	WP_086254292.1	3'-5' exonuclease	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 33889.54 Da
• Isoelectric Point: 9.8344

>NTDB_id=210250 CVIC12175_RS01115 WP_086315797.1 207325..208245(-) (waaF) [Campylobacter vicugnae strain RM12175]
MRIFIELPTWLGDGVMSSAAIANIRANFKDAKLTFFGSAASTALFANLGDIIIDESKKSKFRLAYLYKLAKSQPKFDAFI
SFRSHLASKALAFFIHARKSGVYKPINKSDHLVVDYLNFSAKALNIDILTNELELNFTPKKYTKPTLGLNPGATYGSAKR
WYPSYFADVAMSLSSKFDIVIFGGNGEKEICDEISEILTKNQISHKNLCAKTSIKELASYIAGLELFITNDSGPMHIAAA
FKVPTVALFGPTNFTRTSPYNNPKARLAHLNLPCMPCMKRVCPLGSHECMKELKPALALELTRQII

Nucleotide

• Length: 921 bp

>NTDB_id=210250 CVIC12175_RS01115 WP_086315797.1 207325..208245(-) (waaF) [Campylobacter vicugnae strain RM12175]
GTGAGAATATTCATTGAGCTACCAACATGGCTTGGCGATGGAGTGATGAGTAGTGCTGCTATTGCAAATATTAGGGCAAA
TTTTAAAGATGCAAAATTAACATTTTTTGGCTCTGCGGCTAGTACAGCTCTATTTGCTAATCTTGGCGATATCATAATAG
ATGAGTCCAAAAAATCCAAATTTCGCCTAGCATATCTATATAAATTAGCCAAATCCCAGCCTAAATTTGATGCATTTATT
AGCTTTAGAAGCCATCTAGCCTCAAAAGCTTTGGCATTTTTTATCCACGCTAGAAAAAGTGGAGTCTATAAGCCAATTAA
TAAAAGCGATCATTTAGTAGTTGATTATCTAAATTTTAGTGCAAAAGCTTTAAATATAGATATTTTAACTAATGAACTTG
AGTTAAATTTTACTCCAAAAAAATATACAAAACCAACACTAGGTCTAAATCCAGGTGCTACATATGGAAGTGCTAAAAGA
TGGTATCCAAGCTATTTTGCCGATGTAGCAATGAGCTTAAGTAGTAAATTTGATATAGTTATCTTTGGCGGTAATGGTGA
AAAAGAGATTTGCGATGAAATTAGCGAAATTCTAACCAAAAATCAAATTTCGCATAAAAATCTATGCGCTAAAACATCAA
TCAAAGAGCTTGCTAGCTATATTGCCGGACTTGAGCTATTTATAACCAATGATAGCGGACCAATGCATATCGCAGCTGCT
TTTAAGGTGCCAACAGTTGCACTATTTGGCCCAACTAACTTTACTAGAACTAGCCCATATAATAATCCAAAAGCAAGACT
AGCACATCTAAATTTACCATGTATGCCATGTATGAAAAGGGTCTGTCCGCTAGGCTCTCATGAGTGTATGAAAGAGCTAA
AACCAGCCCTTGCATTAGAACTAACTAGGCAGATTATTTAG

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (102-285)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	47.152	100	0.487