Detailed information
Bioinformatically predicted
Overview
| Name | pilV | Type | Machinery gene |
| Locus tag | DR_RS02815 | Genome accession | NC_001263 |
| Coordinates | 551157..551534 (-) | Length | 125 a.a. |
| NCBI ID | WP_010887191.1 | Uniprot ID | Q9RWW9 |
| Organism | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 546157..556534
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DR_RS02785 (DR_0540) | - | 546243..547562 (-) | 1320 | WP_162177565.1 | hypothetical protein | - |
| DR_RS02790 (DR_0541) | - | 547773..548567 (-) | 795 | WP_034349478.1 | DUF72 domain-containing protein | - |
| DR_RS02795 (DR_0542) | - | 548592..549269 (-) | 678 | WP_010887187.1 | glycerophosphodiester phosphodiesterase | - |
| DR_RS02800 (DR_0543) | - | 549374..550057 (+) | 684 | WP_010887188.1 | SDR family oxidoreductase | - |
| DR_RS02805 (DR_0544) | - | 550134..550901 (+) | 768 | WP_010887189.1 | sulfite exporter TauE/SafE family protein | - |
| DR_RS02810 (DR_0545) | - | 550898..551173 (+) | 276 | WP_027479532.1 | hypothetical protein | - |
| DR_RS02815 (DR_0546) | pilV | 551157..551534 (-) | 378 | WP_010887191.1 | type IV pilin protein | Machinery gene |
| DR_RS02820 (DR_0547) | - | 551901..553085 (+) | 1185 | WP_162177563.1 | HTTM domain-containing protein | - |
| DR_RS02825 | pilV | 553128..553604 (-) | 477 | WP_034349477.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| DR_RS02830 (DR_0549) | dnaB | 554038..555384 (+) | 1347 | WP_010887194.1 | replicative DNA helicase | - |
| DR_RS02835 (DR_0550) | - | 555381..556133 (+) | 753 | WP_010887195.1 | NUDIX domain-containing protein | - |
Sequence
Protein
Download Length: 125 a.a. Molecular weight: 13107.95 Da Isoelectric Point: 5.7683
>NTDB_id=21025 DR_RS02815 WP_010887191.1 551157..551534(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539]
MQKATEAFTLIELLVVMTIIAILISVLVPSLAGARSKAYDSATTSYLRHCASALEISRDDLGVLPSPPPTSCEDPALGVN
AQSKPASVKQSQVTVTSSGTAYTISALSQSGKTFTYDQGGFREIP
MQKATEAFTLIELLVVMTIIAILISVLVPSLAGARSKAYDSATTSYLRHCASALEISRDDLGVLPSPPPTSCEDPALGVN
AQSKPASVKQSQVTVTSSGTAYTISALSQSGKTFTYDQGGFREIP
Nucleotide
Download Length: 378 bp
>NTDB_id=21025 DR_RS02815 WP_010887191.1 551157..551534(-) (pilV) [Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539]
ATGCAAAAGGCCACTGAGGCATTCACACTGATCGAGCTTCTCGTAGTGATGACGATAATCGCCATTCTCATCTCTGTGCT
TGTACCTAGCCTCGCGGGCGCCAGAAGTAAAGCTTATGACAGCGCCACGACATCCTACCTTCGCCATTGCGCCTCAGCGC
TTGAAATCTCACGAGACGATCTAGGAGTTTTGCCAAGTCCCCCACCAACCAGTTGTGAGGATCCAGCACTGGGTGTCAAT
GCGCAGAGCAAGCCGGCATCGGTCAAACAATCACAAGTTACGGTTACCAGCAGTGGCACTGCTTATACCATTAGTGCTCT
TTCACAAAGTGGCAAGACCTTTACCTACGATCAGGGTGGCTTTAGAGAAATCCCTTGA
ATGCAAAAGGCCACTGAGGCATTCACACTGATCGAGCTTCTCGTAGTGATGACGATAATCGCCATTCTCATCTCTGTGCT
TGTACCTAGCCTCGCGGGCGCCAGAAGTAAAGCTTATGACAGCGCCACGACATCCTACCTTCGCCATTGCGCCTCAGCGC
TTGAAATCTCACGAGACGATCTAGGAGTTTTGCCAAGTCCCCCACCAACCAGTTGTGAGGATCCAGCACTGGGTGTCAAT
GCGCAGAGCAAGCCGGCATCGGTCAAACAATCACAAGTTACGGTTACCAGCAGTGGCACTGCTTATACCATTAGTGCTCT
TTCACAAAGTGGCAAGACCTTTACCTACGATCAGGGTGGCTTTAGAGAAATCCCTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilV | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
42.857 |
95.2 |
0.408 |