Detailed information NTG0210237

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: CVIC8964_RS01050
• Genome accession: NZ_CP018791
• Coordinates: 203514..204434 (-)
• Length: 306 a.a.
• NCBI ID: WP_086333341.1
• Uniprot ID: A0A1X9SZP2
• Organism: Campylobacter vicugnae strain RM8964
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 198514..209434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CVIC8964_RS01025 (CVIC8964_0204)	gmhB	198791..199297 (+)	507	WP_086254301.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
CVIC8964_RS01030 (CVIC8964_0205)	rfaD	199294..200259 (+)	966	WP_086333338.1	ADP-glyceromanno-heptose 6-epimerase	-
CVIC8964_RS01035 (CVIC8964_0206)	rfaE1	200259..201635 (+)	1377	WP_086333339.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
CVIC8964_RS01040 (CVIC8964_0207)	gmhA	201645..202202 (+)	558	WP_086235455.1	D-sedoheptulose 7-phosphate isomerase	-
CVIC8964_RS01045 (CVIC8964_0208)	-	202246..203484 (+)	1239	WP_086333340.1	restriction endonuclease subunit S	-
CVIC8964_RS01050 (CVIC8964_0209)	waaF	203514..204434 (-)	921	WP_086333341.1	lipopolysaccharide heptosyltransferase II	Regulator
CVIC8964_RS01055 (CVIC8964_0210)	-	204418..205437 (-)	1020	WP_086333342.1	glycosyltransferase family 4 protein	-
CVIC8964_RS01060 (CVIC8964_0211)	-	205474..206535 (-)	1062	WP_086333343.1	glycosyltransferase family 9 protein	-
CVIC8964_RS01065 (CVIC8964_0212)	-	206532..207395 (-)	864	WP_086333344.1	lipid A biosynthesis lauroyl acyltransferase	-
CVIC8964_RS01070 (CVIC8964_0213)	waaC	207388..208353 (-)	966	WP_086333345.1	lipopolysaccharide heptosyltransferase I	-
CVIC8964_RS01075 (CVIC8964_0214)	-	208414..209223 (+)	810	WP_086333346.1	3'-5' exonuclease	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 33822.49 Da
• Isoelectric Point: 9.7513

>NTDB_id=210237 CVIC8964_RS01050 WP_086333341.1 203514..204434(-) (waaF) [Campylobacter vicugnae strain RM8964]
MRIFIELPTWLGDGVMSSAAIANIRANFKDAKLTFFGSAASTALFANLGDIIIDESKKSKFRLAYLYKLAKAQPKFDAFI
SFRSHLASKALAFFIHAPKSGVYRPINKSDHLVVDYLNFSAKALNIDILTNELELNFTPKKYTKPTLGLNPGATYGSAKR
WYPSYFADVAMSLSSKFDIVIFGGNGEKEICDEISEILTKNQIPHKNLCAKTSIKELASYIAGLELFITNDSGPMHIAAA
FKVPTVALFGPTNFTRTSPYNNPKARLAHLNLPCMPCMKRVCPLGSHECMKELKPALALELARQII

Nucleotide

• Length: 921 bp

>NTDB_id=210237 CVIC8964_RS01050 WP_086333341.1 203514..204434(-) (waaF) [Campylobacter vicugnae strain RM8964]
GTGAGAATATTCATTGAGCTACCAACATGGCTTGGCGATGGAGTGATGAGTAGTGCTGCTATTGCAAATATTAGGGCAAA
TTTTAAAGATGCAAAATTAACATTTTTTGGCTCTGCGGCTAGTACAGCTCTATTTGCTAATCTTGGCGATATTATAATCG
ATGAGTCCAAAAAATCCAAATTCCGCCTAGCATATCTATATAAATTAGCCAAAGCCCAGCCTAAATTTGATGCATTTATC
AGCTTTAGAAGCCATCTAGCCTCAAAGGCTTTGGCATTTTTTATCCACGCTCCAAAAAGTGGAGTATATAGGCCAATTAA
TAAAAGCGATCATTTAGTAGTAGATTACCTAAATTTTAGTGCAAAAGCTTTAAATATAGATATTTTAACTAATGAACTTG
AGTTAAATTTTACTCCAAAAAAATATACAAAACCAACACTAGGTCTAAATCCAGGCGCTACATATGGAAGTGCTAAAAGA
TGGTATCCAAGCTATTTTGCCGATGTAGCAATGAGCTTAAGTAGTAAATTTGATATAGTTATCTTTGGCGGTAATGGTGA
AAAAGAGATTTGCGATGAAATTAGTGAAATTCTAACCAAAAATCAAATTCCACATAAAAATCTATGTGCTAAAACATCAA
TAAAAGAGCTTGCCAGCTATATTGCCGGACTTGAGCTATTTATAACCAATGATAGTGGACCAATGCATATCGCAGCTGCT
TTTAAAGTACCAACAGTTGCACTATTTGGGCCGACTAACTTTACTAGAACTAGCCCATATAATAACCCAAAAGCAAGACT
AGCACATCTAAATTTACCATGTATGCCATGTATGAAAAGAGTCTGTCCGCTAGGCTCTCATGAGTGTATGAAAGAGCTAA
AACCAGCCCTTGCATTAGAACTAGCTAGGCAGATTATTTAG

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (61-285)

3D structure

• AlphaFold DB: A0A1X9SZP2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	47.152	100	0.487