Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   BSU_40370 Genome accession   NC_000964
Coordinates   4148851..4149645 (-) Length   264 a.a.
NCBI ID   NP_391917.2    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4143851..4154645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_40340 (BSU40340) rocD 4144301..4145506 (-) 1206 NP_391914.1 ornithine aminotransferase -
  BSU_40350 (BSU40350) rocR 4145747..4147132 (+) 1386 NP_391915.1 transcriptional regulator (NtrC/NifA family) -
  BSU_40358 (BSU40358) - 4147419..4147547 (-) 129 YP_009514013.1 hypothetical protein -
  BSU_40360 (BSU40360) htrA 4147567..4148769 (-) 1203 NP_391916.1 sporulation membrane serine protease Regulator
  BSU_40370 (BSU40370) vicX 4148851..4149645 (-) 795 NP_391917.2 putative hydrolase Regulator
  BSU_40380 (BSU40380) walI 4149667..4150509 (-) 843 NP_391918.1 regulator of WalRK -
  BSU_40390 (BSU40390) walH 4150496..4151863 (-) 1368 NP_391919.1 regulator of WalRK(YycFG) -
  BSU_40400 (BSU40400) walK 4151853..4153688 (-) 1836 NP_391920.1 two-component sensor histidine kinase [YycG] -
  BSU_40410 (BSU40410) walR 4153696..4154403 (-) 708 NP_391921.1 two-component response regulator [YycF] -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29256.25 Da        Isoelectric Point: 5.8036

>NTDB_id=21019 BSU_40370 NP_391917.2 4148851..4149645(-) (vicX) [Bacillus subtilis subsp. subtilis str. 168]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYSGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=21019 BSU_40370 NP_391917.2 4148851..4149645(-) (vicX) [Bacillus subtilis subsp. subtilis str. 168]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTTTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAGCGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGAAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53

Multiple sequence alignment