Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BSU_39660 Genome accession   NC_000964
Coordinates   4072284..4072973 (-) Length   229 a.a.
NCBI ID   NP_391845.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4067284..4077973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_39620 (BSU39620) yxeA 4068189..4068536 (-) 348 NP_391841.1 hypothetical protein -
  BSU_39630 (BSU39630) tpeM 4068550..4070418 (-) 1869 NP_391842.2 ABC transporter (permease); efflux of cationic peptides -
  BSU_39640 (BSU39640) tpeL 4070393..4071166 (-) 774 NP_391843.2 ABC transporter (ATP-binding protein); efflux of cationic peptides -
  BSU_39650 (BSU39650) tpeK 4071310..4072287 (-) 978 NP_391844.1 two-component sensor histidine kinase [YxdJ] -
  BSU_39660 (BSU39660) braR 4072284..4072973 (-) 690 NP_391845.1 two-component response regulator [TpeK(YxdK)] Regulator
  BSU_39670 (BSU39670) iolJ 4073081..4073953 (-) 873 NP_391846.1 2-deoxy-5-keto-D-gluconic acid 6-phosphate aldolase -
  BSU_39680 (BSU39680) iolI 4073974..4074810 (-) 837 NP_391847.1 inosose isomerase -
  BSU_39690 (BSU39690) iolH 4074896..4075765 (-) 870 NP_391848.1 putative sugar-phosphate epimerase/isomerase -
  BSU_39700 (BSU39700) iolG 4075785..4076819 (-) 1035 NP_391849.2 myo-inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=21017 BSU_39660 NP_391845.1 4072284..4072973(-) (braR) [Bacillus subtilis subsp. subtilis str. 168]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=21017 BSU_39660 NP_391845.1 4072284..4072973(-) (braR) [Bacillus subtilis subsp. subtilis str. 168]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGTGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment