Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   BTZ13_RS04865 Genome accession   NZ_CP018776
Coordinates   1077557..1078273 (-) Length   238 a.a.
NCBI ID   WP_070704501.1    Uniprot ID   A0A4Q7CJK6
Organism   Staphylococcus condimenti strain StO 2014-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072557..1083273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTZ13_RS04845 (BTZ13_04845) - 1073756..1074400 (+) 645 WP_047132791.1 redox-sensing transcriptional repressor Rex -
  BTZ13_RS04850 (BTZ13_04850) - 1074448..1074672 (-) 225 WP_047132792.1 sulfurtransferase TusA family protein -
  BTZ13_RS04855 (BTZ13_04855) - 1074699..1075784 (-) 1086 WP_047132793.1 YeeE/YedE family protein -
  BTZ13_RS04860 (BTZ13_04860) - 1075994..1077463 (+) 1470 WP_070704504.1 GH32 C-terminal domain-containing protein -
  BTZ13_RS04865 (BTZ13_04865) agrA 1077557..1078273 (-) 717 WP_070704501.1 quorum-sensing response regulator AgrA Regulator
  BTZ13_RS04870 (BTZ13_04870) agrC 1078278..1079573 (-) 1296 WP_047132796.1 quorum-sensing sensor histidine kinase AgrC -
  BTZ13_RS04875 (BTZ13_04875) agrD 1079611..1079748 (-) 138 WP_047132797.1 cyclic lactone autoinducer peptide AgrD -
  BTZ13_RS04880 (BTZ13_04880) - 1079757..1080332 (-) 576 WP_047132798.1 accessory gene regulator AgrB -
  BTZ13_RS13540 (BTZ13_04885) - 1080833..1080913 (+) 81 WP_047132799.1 delta-lysin family phenol-soluble modulin -
  BTZ13_RS04890 (BTZ13_04890) - 1081233..1082033 (-) 801 WP_047132800.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27801.59 Da        Isoelectric Point: 4.8578

>NTDB_id=210126 BTZ13_RS04865 WP_070704501.1 1077557..1078273(-) (agrA) [Staphylococcus condimenti strain StO 2014-01]
MKIIICEDDQQQRAHIEEIINNYIMIEEKPLEIALSTNDPYEVLEYAKNTNDICCYFLDIQLDADINGIKLGSELRKFDT
VGNIVFVTSHSELTYLTFVYKVAAMDFIFKDDPGEMKSRIIDCIETALTRLQLLSKESNVETIELKRGSNSVYVNYDDVM
FFESSSKSHRLIAHLDNRQIEFYGSLKELSNIDDRFFRCHNSFVINRNNIEEVISKEREIHFKNGEHCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=210126 BTZ13_RS04865 WP_070704501.1 1077557..1078273(-) (agrA) [Staphylococcus condimenti strain StO 2014-01]
ATGAAAATTATTATTTGTGAAGATGATCAGCAACAACGCGCACATATTGAGGAAATTATTAATAACTACATTATGATTGA
AGAAAAGCCATTAGAAATTGCACTCTCAACTAATGATCCATATGAAGTTCTTGAATATGCTAAAAATACAAATGACATCT
GTTGTTACTTTTTGGATATTCAACTTGACGCAGATATTAATGGGATTAAACTCGGAAGCGAATTACGTAAATTCGATACG
GTTGGAAATATTGTTTTTGTGACAAGTCATAGTGAATTGACTTATTTAACTTTTGTTTATAAAGTAGCTGCGATGGACTT
TATTTTTAAAGATGATCCAGGAGAAATGAAATCACGTATTATCGATTGTATTGAAACAGCGCTTACCCGTTTACAACTAT
TATCTAAAGAAAGCAATGTTGAAACAATCGAATTAAAACGCGGCAGTAATTCTGTATATGTCAATTACGATGACGTCATG
TTTTTCGAATCATCTTCAAAATCTCACAGATTAATTGCACATTTAGACAATCGCCAAATTGAATTTTATGGGAGCTTGAA
AGAACTCAGTAACATTGATGACCGCTTCTTTCGCTGTCACAACAGTTTCGTAATCAACCGCAACAATATCGAAGAAGTGA
TTTCAAAAGAACGGGAAATTCACTTCAAAAATGGTGAACATTGCTATGTCTCTGTTCGTAACCTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Q7CJK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

79.832

100

0.798

Multiple sequence alignment