Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BBIRT_RS10425 Genome accession   NZ_CP018757
Coordinates   1078508..1080448 (-) Length   646 a.a.
NCBI ID   WP_198554597.1    Uniprot ID   -
Organism   Bifidobacterium bifidum strain PRI     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073508..1085448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBIRT_RS10425 rcrQ 1078508..1080448 (-) 1941 WP_198554597.1 ABC transporter ATP-binding protein Regulator
  BBIRT_RS04575 rcrP 1080498..1082381 (-) 1884 WP_047271406.1 ABC transporter ATP-binding protein Regulator
  BBIRT_RS04580 - 1082600..1083130 (-) 531 WP_003811587.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBIRT_RS04585 - 1083333..1083620 (+) 288 WP_047271404.1 DUF1778 domain-containing protein -
  BBIRT_RS09945 - 1083617..1083961 (+) 345 WP_082247874.1 acetyltransferase -
  BBIRT_RS04595 - 1084007..1084999 (-) 993 WP_047271402.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 646 a.a.        Molecular weight: 70504.22 Da        Isoelectric Point: 6.5053

>NTDB_id=209973 BBIRT_RS10425 WP_198554597.1 1078508..1080448(-) (rcrQ) [Bifidobacterium bifidum strain PRI]
MGGGRTVEKPANFGNVMGKLVYYCRNYLPVIIIALVLGAVGTICQIIGPDKLKDMTNEIVKGLPAVVNGKPVMNSVDFNA
VGRIAWLLVALYVGYAVLSYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQTLGQSL
GSLITSATLFVGALVMMFYNNVIMTLCAIGASILGLIIMMVIMKSSQKYFARQQMALGDVNGHIEEMYAGHLIVKAYNGE
ADSIRRFEKYNADLYESGWKSQFLSGLMMPLMNFVGNFGYVIVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQ
AFQNLQRCAAAAERVFGFLEEPEMDAEPTKAELGVADAAASTARTDSGKLSHRGTRANATAGMTASQRSQLLGYDAAGNP
RTVRGDVEFSHVRFGYEPGKPIIHDFSASVSAGQKVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGIDTTSVPRWNVH
DQFSMVLQDTWVFRGTVRENIAYSKPGVTDEQIVSACKAVGLDHFVRSLPRGYDTVLDDNTSLSQGQRQLLTIARAMVQD
APILILDEATSSVDTRTEELIQKAMDALTVGRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELFAAGGFYADLYNS
QFTLTD

Nucleotide


Download         Length: 1941 bp        

>NTDB_id=209973 BBIRT_RS10425 WP_198554597.1 1078508..1080448(-) (rcrQ) [Bifidobacterium bifidum strain PRI]
ATGGGCGGCGGCCGCACGGTCGAAAAACCTGCCAATTTCGGCAACGTGATGGGCAAGCTCGTCTACTACTGCCGCAACTA
CCTGCCCGTCATCATCATTGCGCTCGTGCTGGGCGCGGTCGGCACGATATGCCAGATCATCGGACCGGACAAACTCAAGG
ACATGACCAACGAGATCGTCAAGGGACTGCCGGCCGTCGTGAACGGCAAGCCGGTGATGAACTCGGTCGATTTCAACGCC
GTCGGCCGCATCGCCTGGCTGCTCGTCGCACTGTACGTCGGCTACGCGGTGCTCAGCTACGTGCAAAGCTGGATGATGGC
GAACGTCACCCAGCGCACCGCCCAGCGCCTGCGCGAATCGATCTCGGTCAAAATCAACAAGCTGCCGCTCAAATACTTCG
ACAAGGTCAGCTACGGCGACGTACTCTCCCGCATCACCAACGACGTCGACGCCATCGGCCAGACGCTCGGCCAGTCCCTC
GGCTCGCTCATTACCTCGGCGACGCTGTTCGTTGGCGCGCTCGTCATGATGTTCTACAACAACGTCATCATGACCCTGTG
CGCGATCGGCGCGAGCATACTGGGACTCATCATCATGATGGTCATCATGAAATCCTCGCAGAAATACTTCGCCCGCCAGC
AGATGGCGCTCGGCGACGTCAACGGCCACATCGAGGAGATGTACGCCGGTCACCTCATCGTCAAGGCGTACAACGGCGAG
GCCGACTCAATCCGCCGCTTTGAGAAGTACAACGCCGACCTGTACGAATCCGGCTGGAAATCGCAGTTCCTGTCAGGCCT
GATGATGCCGCTGATGAACTTCGTCGGCAACTTCGGCTACGTGATCGTGTGCGTGGTCGGTGCAGCGCTCGCCATGGACG
GGCAGATCGAATTCGGCGTGATCGTCGCGTTCATGATGTACATCCGCCTGTTCACCCAGCCGTTGAGCCAGTTCGCGCAG
GCGTTCCAGAACCTGCAGCGATGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTCGAAGAGCCGGAGATGGATGCGGA
ACCGACCAAGGCCGAACTCGGCGTGGCTGATGCCGCCGCGAGCACGGCACGGACGGACAGCGGCAAGCTGTCGCATCGCG
GCACTCGCGCGAATGCCACCGCCGGTATGACGGCTTCGCAGCGTTCGCAGCTGCTCGGCTACGATGCGGCCGGCAACCCC
CGGACCGTGCGCGGCGACGTCGAATTCAGTCACGTGCGATTCGGCTATGAGCCCGGCAAGCCGATCATCCACGACTTCTC
GGCAAGCGTCTCCGCCGGCCAGAAAGTCGCCATCGTCGGTCCGACCGGCGCCGGCAAAACCACCATGGTCAACCTGCTGA
TGCGCTTCTACGAGATCTCCGGCGGCTCCATCTCCATCGACGGCATCGACACCACTTCCGTGCCGCGCTGGAACGTACAC
GACCAGTTCTCCATGGTCCTGCAGGATACATGGGTGTTCCGTGGCACCGTGCGCGAAAACATCGCCTACTCCAAGCCCGG
CGTCACCGACGAGCAGATCGTCTCCGCATGCAAGGCCGTCGGACTCGACCACTTCGTGCGCTCTCTGCCGCGGGGCTACG
ACACCGTGCTCGACGACAACACCTCGCTCTCCCAAGGACAGCGCCAGTTGCTCACCATCGCCCGCGCCATGGTGCAGGAC
GCTCCGATCCTCATCCTTGACGAAGCCACCTCCTCCGTCGACACCCGCACCGAAGAACTCATCCAAAAGGCCATGGATGC
GTTGACCGTGGGGCGCACGAGCTTCGTCATCGCGCACCGCCTCTCCACCATCCGCGACGCCGACATGATTCTCGTCATGA
ACCACGGCGACGTGATCGAGCGCGGTACCCACGAGGAACTGTTCGCGGCGGGAGGGTTTTACGCCGACCTCTACAACAGC
CAATTCACACTCACCGATTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(424-571)

ABC transporter transmembrane region (ABC_membrane)

(32-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.397

97.368

0.491

Multiple sequence alignment