Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   BBIRT_RS04575 Genome accession   NZ_CP018757
Coordinates   1080498..1082381 (-) Length   627 a.a.
NCBI ID   WP_047271406.1    Uniprot ID   A0A9E8C3P5
Organism   Bifidobacterium bifidum strain PRI     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075498..1087381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBIRT_RS10425 rcrQ 1078508..1080448 (-) 1941 WP_198554597.1 ABC transporter ATP-binding protein Regulator
  BBIRT_RS04575 rcrP 1080498..1082381 (-) 1884 WP_047271406.1 ABC transporter ATP-binding protein Regulator
  BBIRT_RS04580 - 1082600..1083130 (-) 531 WP_003811587.1 MarR family winged helix-turn-helix transcriptional regulator -
  BBIRT_RS04585 - 1083333..1083620 (+) 288 WP_047271404.1 DUF1778 domain-containing protein -
  BBIRT_RS09945 - 1083617..1083961 (+) 345 WP_082247874.1 acetyltransferase -
  BBIRT_RS04595 - 1084007..1084999 (-) 993 WP_047271402.1 aldo/keto reductase -
  BBIRT_RS10300 - 1085250..1085669 (-) 420 WP_279264934.1 immunoglobulin-like domain-containing protein -
  BBIRT_RS10305 - 1085649..1085990 (-) 342 Protein_894 hypothetical protein -
  BBIRT_RS04605 - 1086376..1086792 (+) 417 WP_047271400.1 hypothetical protein -

Sequence

Protein


Download         Length: 627 a.a.        Molecular weight: 68142.92 Da        Isoelectric Point: 6.0532

>NTDB_id=209968 BBIRT_RS04575 WP_047271406.1 1080498..1082381(-) (rcrP) [Bifidobacterium bifidum strain PRI]
MLRILKYLSKAEIGQMLIALVTIVGQVFFDLKLPDYMSDITTLVEMPGSAMSDIWIAGGKMLLISLGSVACAIVTGYISA
RVGSSFTQRLRSLEFRKVESYGPAEMSKFSAASLITRSTNDITQIQMFITIGLQLIVKSPIMAVWAICKIAGEGFEWTLA
TGIAVVILLVAVVIMMAMVMPKFKAMQKLTDNINLVARENLTGLRVVRAYNAEDYQEAKFTKANKDLTDTQLFTNRVMAF
MMPLMNTVLNGLMLAVYWIGAYLIDAAGLTDKLNVFSNMVVFSNYSVQVIMSFLLMSMVFVLWPRADVSAQRVLEVLDTD
PIVKTGTKTAADVARLGGGKTGTVEFRNVSFTYPGSREATLEGIDFTAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAG
QVLVDGVDVREYDLKALRDKIGYVPQQSVLFKGTVASNVSYGDDVNGASSADVEMADTYTPAGRKREAEFIAAGKRAEGA
AMPAEQMNRVKAAAGVAQATEFVERMDGTYTAPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDREVR
DALAKEAKGSTKLIVAQRIGTIMNADRIIVLDDGKVVGQGTHQELLDACDVYRQIAESQLSQSELTA

Nucleotide


Download         Length: 1884 bp        

>NTDB_id=209968 BBIRT_RS04575 WP_047271406.1 1080498..1082381(-) (rcrP) [Bifidobacterium bifidum strain PRI]
ATGCTTCGCATCCTGAAATACCTCTCCAAAGCGGAGATCGGTCAGATGCTCATCGCCCTGGTGACCATCGTCGGGCAGGT
CTTCTTCGACCTCAAACTGCCCGATTACATGTCAGACATCACCACGCTCGTCGAGATGCCGGGCAGCGCGATGAGCGACA
TCTGGATCGCCGGCGGCAAGATGCTGCTCATCTCCCTCGGCTCCGTCGCCTGTGCCATCGTCACCGGCTACATCTCCGCA
CGCGTCGGCTCGTCATTCACCCAGCGCCTGCGCTCGCTCGAATTCCGCAAGGTCGAATCCTATGGCCCCGCCGAAATGAG
CAAATTCTCCGCCGCGAGCCTCATCACCCGCTCCACCAACGACATCACGCAGATCCAGATGTTCATCACCATCGGCCTGC
AGCTCATCGTCAAGTCGCCGATCATGGCCGTATGGGCCATATGCAAGATCGCCGGCGAAGGTTTCGAATGGACTCTCGCC
ACCGGCATCGCCGTCGTCATCCTGCTCGTCGCCGTCGTCATCATGATGGCCATGGTCATGCCCAAGTTCAAGGCCATGCA
GAAGCTCACCGACAACATCAACCTCGTGGCCCGCGAAAACCTCACCGGCCTGCGCGTCGTGCGCGCCTACAACGCCGAGG
ACTACCAGGAGGCCAAGTTCACCAAGGCCAACAAGGACCTCACCGACACGCAGCTGTTCACCAACCGCGTCATGGCGTTC
ATGATGCCGCTGATGAACACCGTCCTGAACGGCCTGATGCTCGCCGTCTACTGGATCGGCGCCTATCTGATCGACGCCGC
CGGCCTGACGGACAAGCTCAACGTGTTCTCCAACATGGTCGTCTTCTCCAACTACTCCGTGCAGGTCATCATGAGCTTCC
TGCTGATGAGCATGGTGTTCGTGCTCTGGCCGCGCGCCGATGTGTCCGCGCAGCGCGTGCTCGAAGTGCTCGACACCGAT
CCGATCGTCAAAACCGGCACCAAGACCGCCGCCGACGTGGCGCGTCTGGGCGGCGGGAAAACCGGCACCGTCGAGTTCCG
CAACGTGAGCTTCACCTACCCCGGCTCACGCGAGGCGACGCTCGAAGGCATCGACTTCACCGCCGAAAAGGGCCAGACCG
TCGCGTTCATCGGCTCCACCGGCTCCGGCAAGTCCAGCCTCATCAACCTCGTGCCGCGCTTCTACGACGTGTCGGCCGGG
CAGGTGCTCGTCGACGGTGTGGACGTGCGCGAATACGATCTGAAAGCCCTTCGCGACAAGATCGGATACGTGCCGCAGCA
GTCCGTGCTGTTCAAGGGCACGGTCGCATCCAACGTGAGCTACGGCGACGACGTGAACGGGGCAAGCTCCGCGGACGTCG
AAATGGCCGACACCTACACTCCGGCCGGCCGCAAACGCGAAGCCGAATTCATCGCCGCGGGCAAGAGAGCGGAAGGCGCC
GCAATGCCGGCTGAACAGATGAACCGGGTCAAGGCGGCGGCCGGCGTCGCTCAGGCCACCGAGTTCGTCGAGCGCATGGA
CGGCACATACACCGCCCCGATCGCACAAGGCGGGTCCAACGTCTCCGGCGGCCAGAAGCAGCGCCTGTCAATCGCGCGCG
CCGTCTACCGCCACCCCGAAATCCTGATCTTCGACGACTCGTTCTCCGCGCTCGACTTCAAGACCGACCGCGAAGTTCGC
GACGCACTCGCCAAAGAGGCCAAGGGATCCACCAAGCTCATCGTCGCCCAGCGCATCGGCACGATCATGAACGCCGACCG
CATCATCGTGCTCGATGACGGCAAGGTCGTCGGTCAAGGCACCCATCAGGAACTGCTCGACGCCTGCGATGTCTACCGTC
AGATCGCCGAATCCCAGCTCAGTCAGTCGGAACTGACCGCGTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(19-292)

ABC transporter (ABC_tran)

(361-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

47.253

100

0.48

Multiple sequence alignment