Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CRT55_RS19815 Genome accession   NZ_CP024056
Coordinates   3417429..3417905 (-) Length   158 a.a.
NCBI ID   WP_062882313.1    Uniprot ID   -
Organism   Escherichia coli strain SMN197SH3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3412429..3422905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT55_RS19770 (CRT55_19675) aat 3412865..3413569 (+) 705 WP_062882312.1 leucyl/phenylalanyl-tRNA--protein transferase -
  CRT55_RS19775 (CRT55_19685) infA 3413854..3414072 (+) 219 WP_001040187.1 translation initiation factor IF-1 -
  CRT55_RS19785 (CRT55_19695) - 3414563..3415405 (-) 843 WP_001280481.1 DUF4942 domain-containing protein -
  CRT55_RS19790 (CRT55_19700) - 3415490..3415687 (-) 198 WP_000839282.1 DUF957 domain-containing protein -
  CRT55_RS19795 (CRT55_19705) - 3415699..3416190 (-) 492 WP_000976857.1 DUF5983 family protein -
  CRT55_RS19800 (CRT55_19710) - 3416187..3416561 (-) 375 WP_000854914.1 TA system toxin CbtA family protein -
  CRT55_RS19805 (CRT55_19715) - 3416608..3416982 (-) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CRT55_RS19810 (CRT55_19720) yeeT 3417145..3417366 (-) 222 WP_001220314.1 DUF987 domain-containing protein -
  CRT55_RS19815 (CRT55_19725) radC 3417429..3417905 (-) 477 WP_062882313.1 RadC family protein Machinery gene
  CRT55_RS19820 (CRT55_19730) - 3417921..3418406 (-) 486 WP_000214398.1 antirestriction protein -
  CRT55_RS19825 (CRT55_19735) - 3418497..3419315 (-) 819 WP_001234682.1 DUF932 domain-containing protein -
  CRT55_RS19840 (CRT55_19750) - 3419655..3420724 (-) 1070 Protein_3526 patatin-like phospholipase family protein -
  CRT55_RS19845 (CRT55_19755) - 3420721..3421626 (-) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17654.23 Da        Isoelectric Point: 6.7739

>NTDB_id=209927 CRT55_RS19815 WP_062882313.1 3417429..3417905(-) (radC) [Escherichia coli strain SMN197SH3]
MQQLSFLPGEMTPGERSLILRALQTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=209927 CRT55_RS19815 WP_062882313.1 3417429..3417905(-) (radC) [Escherichia coli strain SMN197SH3]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGCAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGTACGGAAGTTCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386