Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CRT55_RS19375 Genome accession   NZ_CP024056
Coordinates   3318281..3318910 (-) Length   209 a.a.
NCBI ID   WP_032186268.1    Uniprot ID   -
Organism   Escherichia coli strain SMN197SH3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3313281..3323910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CRT55_RS19360 (CRT55_19260) helD 3313523..3315577 (-) 2055 WP_000420537.1 DNA helicase IV -
  CRT55_RS19365 (CRT55_19265) yccF 3315700..3316146 (+) 447 WP_062882281.1 YccF domain-containing protein -
  CRT55_RS19370 (CRT55_19270) yccS 3316156..3318318 (+) 2163 WP_074434046.1 YccS family putative transporter -
  CRT55_RS19375 (CRT55_19275) sxy/tfoX 3318281..3318910 (-) 630 WP_032186268.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CRT55_RS19380 (CRT55_19280) sulA 3319129..3319638 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CRT55_RS19390 (CRT55_19290) ompA 3319995..3321035 (+) 1041 WP_062882317.1 porin OmpA -
  CRT55_RS19395 (CRT55_19295) matP 3321111..3321563 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CRT55_RS19400 (CRT55_19300) ycbZ 3321749..3323509 (+) 1761 WP_062882282.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24177.04 Da        Isoelectric Point: 8.9883

>NTDB_id=209925 CRT55_RS19375 WP_032186268.1 3318281..3318910(-) (sxy/tfoX) [Escherichia coli strain SMN197SH3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLWQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=209925 CRT55_RS19375 WP_032186268.1 3318281..3318910(-) (sxy/tfoX) [Escherichia coli strain SMN197SH3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGTGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment